Personal tools

MCL coexpression mm9:232: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=0,0.714975262793003,0.621694909807424,0.856499824105913,0.902919949222061,0.502758932778609,0.491713717070529,0.0527413783866199,0,0.0196902943622092,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644551523736777,0.0896964873768703,0.518109443993596,0.431054477729275,0.399379240739151,0.0377777541586983,0.0976147801771522,0.126742805154411,0,0,0,0.899406734188964,0.411264302367486,0.864890966505215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389045962020779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0498445641291176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123988367667141,0.0284978791781446,0,0,0,0,0,0,0,0,0,0,0,0,0.0424914383301275,0.0788703512227347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.056886356216389,0,0,0,0,0,0,0,0,0,0,0.0341002753866071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0.714975262793003,0.621694909807424,0.856499824105913,0.902919949222061,0.502758932778609,0.491713717070529,0.0527413783866199,0,0.0196902943622092,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644551523736777,0.0896964873768703,0.518109443993596,0.431054477729275,0.399379240739151,0.0377777541586983,0.0976147801771522,0.126742805154411,0,0,0,0.899406734188964,0.411264302367486,0.864890966505215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389045962020779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0498445641291176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123988367667141,0.0284978791781446,0,0,0,0,0,0,0,0,0,0,0,0,0.0424914383301275,0.0788703512227347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.056886356216389,0,0,0,0,0,0,0,0,0,0,0.0341002753866071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002563!1.81e-31!9;CL:0002251!1.81e-31!9;CL:0000066!8.48e-22!25;CL:0000239!1.88e-21!6;CL:0000677!1.88e-21!6;CL:0000212!1.88e-21!6;CL:0000584!1.88e-21!6;CL:0000075!2.66e-18!7;CL:0002076!2.93e-18!15;CL:0000223!2.29e-16!20;CL:0002250!1.45e-11!3;CL:0000627!4.04e-11!3;CL:0000682!4.04e-11!3
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000344!2.16e-49!15;UBERON:0001242!2.18e-43!13;UBERON:0000060!2.18e-43!13;UBERON:0001262!2.18e-43!13;UBERON:0004786!2.18e-43!13;UBERON:0003350!1.81e-31!9;UBERON:0004808!1.81e-31!9;UBERON:0001277!1.81e-31!9;UBERON:0004923!9.39e-30!24;UBERON:0000160!1.37e-28!31;UBERON:0000485!1.81e-25!11;UBERON:0005409!6.35e-20!47;UBERON:0000331!2.70e-10!3;UBERON:0002116!2.70e-10!3;UBERON:0001204!2.70e-10!3;UBERON:0001168!2.70e-10!3;UBERON:0001007!6.45e-10!116;UBERON:0001555!6.45e-10!116;UBERON:0007026!6.45e-10!116;UBERON:0004119!1.12e-09!118;UBERON:0000925!1.12e-09!118;UBERON:0006595!1.12e-09!118;UBERON:0004921!5.68e-08!114;UBERON:0002108!7.80e-08!4;UBERON:0000064!1.17e-07!99;UBERON:0001962!2.11e-07!2;UBERON:0001961!2.11e-07!2;UBERON:0001744!2.11e-07!2
}}
}}

Revision as of 18:16, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:19251573..19251584,+p@chr10:19251573..19251584
+
Mm9::chr10:19311485..19311498,-p@chr10:19311485..19311498
-
Mm9::chr10:19311507..19311518,-p@chr10:19311507..19311518
-
Mm9::chr10:80084956..80084961,+p@chr10:80084956..80084961
+
Mm9::chr13:29045783..29045789,+p@chr13:29045783..29045789
+
Mm9::chr13:49066571..49066574,-p@chr13:49066571..49066574
-
Mm9::chr16:91548532..91548555,-p@chr16:91548532..91548555
-
Mm9::chr17:48557501..48557504,-p@chr17:48557501..48557504
-
Mm9::chr17:57201412..57201418,-p@chr17:57201412..57201418
-
Mm9::chr17:88027583..88027596,-p@chr17:88027583..88027596
-
Mm9::chr18:35020075..35020080,-p@chr18:35020075..35020080
-
Mm9::chr18:36576247..36576252,-p@chr18:36576247..36576252
-
Mm9::chr19:53113331..53113339,+p@chr19:53113331..53113339
+
Mm9::chr1:37598054..37598057,+p@chr1:37598054..37598057
+
Mm9::chr1:88423123..88423134,-p@chr1:88423123..88423134
-
Mm9::chr2:32390106..32390122,+p@chr2:32390106..32390122
+
Mm9::chr2:38781010..38781017,+p@chr2:38781010..38781017
+
Mm9::chr3:38384117..38384133,+p@chr3:38384117..38384133
+
Mm9::chr5:135442713..135442733,+p@chr5:135442713..135442733
+
Mm9::chr5:145015979..145015991,-p@chr5:145015979..145015991
-
Mm9::chr5:145119593..145119596,+p@chr5:145119593..145119596
+
Mm9::chr5:149995849..149995870,-p3@5730422E09Rik
Mm9::chr5:29705144..29705147,+p4@ENSMUST00000167870
Mm9::chr5:73038906..73038922,-p@chr5:73038906..73038922
-
Mm9::chr6:134870305..134870314,-p@chr6:134870305..134870314
-
Mm9::chr7:123602470..123602475,-p@chr7:123602470..123602475
-
Mm9::chr7:19814274..19814293,+p@chr7:19814274..19814293
+
Mm9::chr7:19814309..19814320,+p@chr7:19814309..19814320
+
Mm9::chr7:29382208..29382215,+p@chr7:29382208..29382215
+
Mm9::chr7:29617397..29617411,+p@chr7:29617397..29617411
+
Mm9::chr7:29716734..29716736,+p@chr7:29716734..29716736
+
Mm9::chr7:4101973..4101978,-p4@Leng9
Mm9::chr7:52317191..52317193,+p@chr7:52317191..52317193
+
Mm9::chr8:126155114..126155118,+p1@uc009nwl.1
Mm9::chr8:35868112..35868121,+p@chr8:35868112..35868121
+
Mm9::chr9:66888952..66888964,+p@chr9:66888952..66888964
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
mucosa2.16e-4915
intestinal mucosa2.18e-4313
anatomical wall2.18e-4313
wall of intestine2.18e-4313
gastrointestinal system mucosa2.18e-4313
epithelium of mucosa1.81e-319
gastrointestinal system epithelium1.81e-319
intestinal epithelium1.81e-319
organ component layer9.39e-3024
intestine1.37e-2831
simple columnar epithelium1.81e-2511
gastrointestinal system6.35e-2047
ileal mucosa2.70e-103
ileum2.70e-103
mucosa of small intestine2.70e-103
wall of small intestine2.70e-103
digestive system6.45e-10116
digestive tract6.45e-10116
primitive gut6.45e-10116
endoderm-derived structure1.12e-09118
endoderm1.12e-09118
presumptive endoderm1.12e-09118
subdivision of digestive tract5.68e-08114
small intestine7.80e-084
organ part1.17e-0799
gut-associated lymphoid tissue2.11e-072
mucosa-associated lymphoid tissue2.11e-072
lymphoid tissue2.11e-072


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:232&oldid=2154533"