MCL coexpression mm9:239

Phase1 CAGE Peaks

	Short description
Mm9::chr10:124988598..124988600,+	p@chr10:124988598..124988600 +
Mm9::chr10:36958849..36958852,+	p@chr10:36958849..36958852 +
Mm9::chr10:94173889..94173890,-	p@chr10:94173889..94173890 -
Mm9::chr11:118377098..118377101,+	p@chr11:118377098..118377101 +
Mm9::chr15:82282802..82282815,+	p1@Cyp2d9
Mm9::chr16:18410871..18410893,-	p@chr16:18410871..18410893 -
Mm9::chr16:22899291..22899297,+	p@chr16:22899291..22899297 +
Mm9::chr16:22899461..22899472,+	p@chr16:22899461..22899472 +
Mm9::chr16:22899486..22899494,+	p@chr16:22899486..22899494 +
Mm9::chr16:77838388..77838392,+	p@chr16:77838388..77838392 +
Mm9::chr17:15914532..15914535,+	p@chr17:15914532..15914535 +
Mm9::chr17:32067507..32067510,+	p@chr17:32067507..32067510 +
Mm9::chr18:87925672..87925680,+	p1@ENSMUST00000091776
Mm9::chr1:13864450..13864458,+	p@chr1:13864450..13864458 +
Mm9::chr1:7167752..7167760,+	p1@ENSMUST00000029124
Mm9::chr1:94791475..94791478,+	p@chr1:94791475..94791478 +
Mm9::chr2:122060569..122060577,+	p2@Sord
Mm9::chr2:156282978..156282979,+	p@chr2:156282978..156282979 +
Mm9::chr2:172984701..172984706,+	p@chr2:172984701..172984706 +
Mm9::chr3:14864162..14864173,+	p@chr3:14864162..14864173 +
Mm9::chr3:89539611..89539638,+	p@chr3:89539611..89539638 +
Mm9::chr4:50498164..50498166,+	p@chr4:50498164..50498166 +
Mm9::chr4:60016350..60016358,+	p1@Mup6
Mm9::chr4:61335128..61335131,-	p1@LOC100048884 p1@Mup14
Mm9::chr4:61443256..61443260,-	p2@Mup12 p2@Mup16 p2@Mup17 p2@Mup19 p2@Mup9
Mm9::chr4:61715146..61715151,-	p1@Mup20
Mm9::chr5:127887029..127887031,+	p@chr5:127887029..127887031 +
Mm9::chr5:44194868..44194871,+	p@chr5:44194868..44194871 +
Mm9::chr6:138096234..138096265,+	p@chr6:138096234..138096265 +
Mm9::chr6:138105225..138105237,+	p@chr6:138105225..138105237 +
Mm9::chr7:112744083..112744109,-	p@chr7:112744083..112744109 -
Mm9::chr7:148648620..148648622,+	p12@Efcab4a
Mm9::chr8:13012412..13012413,+	p@chr8:13012412..13012413 +
Mm9::chr9:120730227..120730233,+	p@chr9:120730227..120730233 +
Mm9::chrX:45409736..45409738,+	p@chrX:45409736..45409738 +

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0003939	L-iditol 2-dehydrogenase activity	0.0132825759081275
GO:0003692	left-handed Z-DNA binding	0.0132825759081275
GO:0005792	microsome	0.0132825759081275
GO:0042598	vesicular fraction	0.0132825759081275
GO:0016553	base conversion or substitution editing	0.0132825759081275
GO:0003726	double-stranded RNA adenosine deaminase activity	0.0132825759081275
GO:0003969	RNA editase activity	0.0151784233633089
GO:0004000	adenosine deaminase activity	0.0265506003537321
GO:0031047	RNA-mediated gene silencing	0.0320874135331278
GO:0043169	cation binding	0.0320874135331278
GO:0006749	glutathione metabolic process	0.0320874135331278
GO:0046872	metal ion binding	0.0320874135331278
GO:0009451	RNA modification	0.0320874135331278
GO:0005624	membrane fraction	0.0320874135331278
GO:0043167	ion binding	0.0320874135331278
GO:0019239	deaminase activity	0.0320874135331278
GO:0051287	NAD binding	0.0320874135331278
GO:0004364	glutathione transferase activity	0.0320874135331278
GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	0.0320874135331278
GO:0000267	cell fraction	0.0325170541772116
GO:0003725	double-stranded RNA binding	0.0325170541772116
GO:0016458	gene silencing	0.0325170541772116
GO:0050381	unspecific monooxygenase activity	0.0368429415700452
GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	0.0419004765711758
GO:0005783	endoplasmic reticulum	0.0488021084113138
GO:0043566	structure-specific DNA binding	0.0488021084113138

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

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Cell Type

Ontology term	p-value	n

Uber Anatomy

Ontology term	p-value	n

Disease

Ontology term	p-value	n

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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