Personal tools

Difference between revisions of "MCL coexpression mm9:2680"

From FANTOM5_SSTAR

Jump to: navigation, search
Line 1: Line 1:
 
{{MCL_coexpression_mm9
 
{{MCL_coexpression_mm9
 
|coexpression_dpi_cluster_scores_mean=0.0365913203427832,0.339107944921151,0.46036530096665,0.792347413114328,0.758589263940659,0.378950611791512,0.354722945722523,0.361153472423846,0.240741604412519,0.235652761334761,0.0553160372002347,0.0475245792288059,0.2847563358654,0.317552042244741,-0.0202062562254905,0.0331778454632545,-0.0202062562254905,0.0406890954419274,0.0334776143732367,0.0310033470614652,0.337557470167055,0.0561867754707033,0.0833439628876383,0.062953493759971,0.0344608373337373,0.390889615208816,0.279795769048178,0.175615010381505,0.0516101887619134,0.0123320038335602,0.066769163557905,0.317186479626825,0.200561039804615,-0.0202062562254905,0.572427806147136,0.321309916342741,0.609302517650645,0.260991417263143,0.23813132292274,0.143304957310851,0.406254304286056,0.245813297137344,0.0370856380736527,0.0433438240741321,0.0322127856197211,-0.0202062562254905,-0.0202062562254905,0.0607357150936449,0.032518130576315,0.00551396582474413,-0.00123969672979424,-0.0202062562254905,0.272619968379941,0.276855999075468,0.196959005907716,-0.0202062562254905,0.0162674367736116,-0.0202062562254905,0.0289813581654559,0.10273035922317,0.050862823534661,0.0220371268550584,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.00592393786453223,0.0423028835899503,0.0506095015214973,0.0452136286636333,-0.0202062562254905,0.0250999334024122,0.0541121486813013,0.0741685724906293,-0.0202062562254905,-0.00281002152234115,-0.0202062562254905,0.064184618301145,0.059301443873932,0.0404952363920833,0.0154379700344965,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.004537388827399,-0.0096390083646748,-0.00965981947956333,0.600851942185513,-0.0202062562254905,0.0548943675008375,-0.0202062562254905,-0.0202062562254905,0.033385952426561,0.0346555992907819,0.0222549585183375,0.0403675054987073,0.0235960043384695,0.109168941053897,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.146580884057164,0.061637846588815,0.113396940648081,0.0796824068997274,0.0131285112489653,0.0374638587180221,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.000117296425769499,-0.00411225465009713,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.071534283243612,0.00150007046934545,0.0086801739004679,-0.0202062562254905,0.204681187775308,-0.0202062562254905,0.0348515679891138,0.0127276976441568,0.0641321876134363,-0.0202062562254905,0.0509974160411147,0,-0.0202062562254905,-0.00307123795864301,0.00299477821345427,-0.0202062562254905,-0.0202062562254905,0.0233246038675161,-0.0202062562254905,0.0552362258889616,0.0124120662408074,0.0306465890320794,-0.0024980125491201,-0.0202062562254905,0.00376203488821793,-0.0202062562254905,-0.0017375102796335,0.0443257481916435,0.00572634171778937,0.040161080174392,0.0363132478875928,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0230507860523896,0.00688335895103023,-0.0202062562254905,0.106797571502648,0.039902218864572,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.00579661069182663,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0366795238584064,-0.0202062562254905,-0.00197555597915257,-0.0202062562254905,0.018741975197117,0.0211231996635564,0.0137610289053915,0.00778174108040727,-0.0202062562254905,-0.00265860454615729,-0.0202062562254905,0.00886225729950747,-0.0202062562254905,0.0360115226069107,-0.0202062562254905,-0.0202062562254905,0.0323293546947399,0.0313636460418484,0.165449518561641,-0.0202062562254905,0.0323739779229993,0.0049356583808213,0.0252458011774574,-0.0202062562254905,0.00662731020050557,0.031118440156293,-0.0202062562254905,-0.00296598443487795,0.0172416241562682,0.000904704251432443,0.0436569556634195,0.0173792944732078,0.00213148008055471,0.0317498210552018,0.00915614417103747,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.00154596569773207,0.043155694885256,-0.0202062562254905,0.0255933187140835,0.0191091788768682,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.00491418068830247,0.00164928904885307,0.0393793911825377,-0.0202062562254905,-0.0202062562254905,0.0107057283681678,0.00559923501474773,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0208299656850804,0.00285419822182776,0.0189086473905584,0.112897890056462,-0.0202062562254905,0.0376938110454327,-0.0202062562254905,-0.0202062562254905,0.0394587165451077,0.00176997957974217,-0.0202062562254905,-0.0202062562254905,0.063338425171866,0.0316581221729227,-0.0202062562254905,0.101157477241896,0.0158779308457149,-0.0202062562254905,0.0169099136211417,-0.0202062562254905,0.0201298908976714,-0.000991816844584601,0.00351690242440643,-0.0202062562254905,0.0431760491476258,-0.0202062562254905,0.0112585697296427,0.048253590222174,0.00480627109975423,0.0172507438343887,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.124087767247209,0.0277300718734159,0.0401637508221813,0.0595512114094433,0.0651826168281206,0.0273145714663686,0.0378764067411067,0.0182712151510135,-0.0202062562254905,0.0587437398690528,-0.0202062562254905,0.0889307524745367,-0.0202062562254905,-0.00371937747045283,0.0107876788253954,-0.0202062562254905,0.0538523880202968,0.0254571196879139,0.0026300788957562,0.00695594413128837,-0.0202062562254905,0.0260773961646332,-0.0202062562254905,0.00961823990139973,0.0221573492565901,0.150433551467147,0.077757952632889,-0.0202062562254905,0.0360090611736623,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0164230452124748,-0.00870976740597913,0.074400812062946,0.0484490518446413,0.0497517148725465,0.72522084624566,-3.45139427093687e-05,0.0211773991668107,0.005516546059882,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.00248726026095513,0.0086650725138383,0.125246072007031,0.611127156918199,0.1734831180199,0.0290655880743949,0.0328315934365997,-0.00252358549166042,0.0240993585734668,0.0282301268948651,0.0366240995697813,0.0328894008864211,0.056751665014399,0.00105756676736817,0.00760624476922683,0.0507215255291238,0.0165037770224786,0.0537154517822695,0.00937678444042263,0.00881581502671677,-0.0077687651107089,0.0217042224334575,0.045973257755839,0.00469385990670833,0.0284873466248059,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0346102739424117,0.0453603683226227,-0.0202062562254905,0.0553341349274108,0.0612519385086872,-0.0202062562254905,-0.0202062562254905,0.0338964696245653,-0.0202062562254905,0.0190346134080609,0.0284022224161232,0.0451397927404578,-0.0202062562254905,-0.0202062562254905,0.00422517612744983,0.0088467048559894,0.0568658083432989,-0.0202062562254905,-0.0202062562254905,0.0124994658950122,0.00480886061307933,0.017603490359381,0.0052283260050896,-0.0202062562254905,-0.0202062562254905,-0.0043331970953276,0.00532954225088957,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.00344440789231767,-0.0202062562254905,-0.0202062562254905,-0.0071860090587041,-0.0202062562254905,0.0249287096210534,-0.0202062562254905,-0.0017717771085261,-0.0202062562254905,-0.00397678605731607,-0.0202062562254905,-0.0202062562254905,0.00064648879878621,-0.0202062562254905,-0.0202062562254905,0.0102241068670245,0.00797047195094097,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905
 
|coexpression_dpi_cluster_scores_mean=0.0365913203427832,0.339107944921151,0.46036530096665,0.792347413114328,0.758589263940659,0.378950611791512,0.354722945722523,0.361153472423846,0.240741604412519,0.235652761334761,0.0553160372002347,0.0475245792288059,0.2847563358654,0.317552042244741,-0.0202062562254905,0.0331778454632545,-0.0202062562254905,0.0406890954419274,0.0334776143732367,0.0310033470614652,0.337557470167055,0.0561867754707033,0.0833439628876383,0.062953493759971,0.0344608373337373,0.390889615208816,0.279795769048178,0.175615010381505,0.0516101887619134,0.0123320038335602,0.066769163557905,0.317186479626825,0.200561039804615,-0.0202062562254905,0.572427806147136,0.321309916342741,0.609302517650645,0.260991417263143,0.23813132292274,0.143304957310851,0.406254304286056,0.245813297137344,0.0370856380736527,0.0433438240741321,0.0322127856197211,-0.0202062562254905,-0.0202062562254905,0.0607357150936449,0.032518130576315,0.00551396582474413,-0.00123969672979424,-0.0202062562254905,0.272619968379941,0.276855999075468,0.196959005907716,-0.0202062562254905,0.0162674367736116,-0.0202062562254905,0.0289813581654559,0.10273035922317,0.050862823534661,0.0220371268550584,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.00592393786453223,0.0423028835899503,0.0506095015214973,0.0452136286636333,-0.0202062562254905,0.0250999334024122,0.0541121486813013,0.0741685724906293,-0.0202062562254905,-0.00281002152234115,-0.0202062562254905,0.064184618301145,0.059301443873932,0.0404952363920833,0.0154379700344965,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.004537388827399,-0.0096390083646748,-0.00965981947956333,0.600851942185513,-0.0202062562254905,0.0548943675008375,-0.0202062562254905,-0.0202062562254905,0.033385952426561,0.0346555992907819,0.0222549585183375,0.0403675054987073,0.0235960043384695,0.109168941053897,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.146580884057164,0.061637846588815,0.113396940648081,0.0796824068997274,0.0131285112489653,0.0374638587180221,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.000117296425769499,-0.00411225465009713,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.071534283243612,0.00150007046934545,0.0086801739004679,-0.0202062562254905,0.204681187775308,-0.0202062562254905,0.0348515679891138,0.0127276976441568,0.0641321876134363,-0.0202062562254905,0.0509974160411147,0,-0.0202062562254905,-0.00307123795864301,0.00299477821345427,-0.0202062562254905,-0.0202062562254905,0.0233246038675161,-0.0202062562254905,0.0552362258889616,0.0124120662408074,0.0306465890320794,-0.0024980125491201,-0.0202062562254905,0.00376203488821793,-0.0202062562254905,-0.0017375102796335,0.0443257481916435,0.00572634171778937,0.040161080174392,0.0363132478875928,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0230507860523896,0.00688335895103023,-0.0202062562254905,0.106797571502648,0.039902218864572,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.00579661069182663,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0366795238584064,-0.0202062562254905,-0.00197555597915257,-0.0202062562254905,0.018741975197117,0.0211231996635564,0.0137610289053915,0.00778174108040727,-0.0202062562254905,-0.00265860454615729,-0.0202062562254905,0.00886225729950747,-0.0202062562254905,0.0360115226069107,-0.0202062562254905,-0.0202062562254905,0.0323293546947399,0.0313636460418484,0.165449518561641,-0.0202062562254905,0.0323739779229993,0.0049356583808213,0.0252458011774574,-0.0202062562254905,0.00662731020050557,0.031118440156293,-0.0202062562254905,-0.00296598443487795,0.0172416241562682,0.000904704251432443,0.0436569556634195,0.0173792944732078,0.00213148008055471,0.0317498210552018,0.00915614417103747,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.00154596569773207,0.043155694885256,-0.0202062562254905,0.0255933187140835,0.0191091788768682,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.00491418068830247,0.00164928904885307,0.0393793911825377,-0.0202062562254905,-0.0202062562254905,0.0107057283681678,0.00559923501474773,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0208299656850804,0.00285419822182776,0.0189086473905584,0.112897890056462,-0.0202062562254905,0.0376938110454327,-0.0202062562254905,-0.0202062562254905,0.0394587165451077,0.00176997957974217,-0.0202062562254905,-0.0202062562254905,0.063338425171866,0.0316581221729227,-0.0202062562254905,0.101157477241896,0.0158779308457149,-0.0202062562254905,0.0169099136211417,-0.0202062562254905,0.0201298908976714,-0.000991816844584601,0.00351690242440643,-0.0202062562254905,0.0431760491476258,-0.0202062562254905,0.0112585697296427,0.048253590222174,0.00480627109975423,0.0172507438343887,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.124087767247209,0.0277300718734159,0.0401637508221813,0.0595512114094433,0.0651826168281206,0.0273145714663686,0.0378764067411067,0.0182712151510135,-0.0202062562254905,0.0587437398690528,-0.0202062562254905,0.0889307524745367,-0.0202062562254905,-0.00371937747045283,0.0107876788253954,-0.0202062562254905,0.0538523880202968,0.0254571196879139,0.0026300788957562,0.00695594413128837,-0.0202062562254905,0.0260773961646332,-0.0202062562254905,0.00961823990139973,0.0221573492565901,0.150433551467147,0.077757952632889,-0.0202062562254905,0.0360090611736623,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0164230452124748,-0.00870976740597913,0.074400812062946,0.0484490518446413,0.0497517148725465,0.72522084624566,-3.45139427093687e-05,0.0211773991668107,0.005516546059882,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,-0.00248726026095513,0.0086650725138383,0.125246072007031,0.611127156918199,0.1734831180199,0.0290655880743949,0.0328315934365997,-0.00252358549166042,0.0240993585734668,0.0282301268948651,0.0366240995697813,0.0328894008864211,0.056751665014399,0.00105756676736817,0.00760624476922683,0.0507215255291238,0.0165037770224786,0.0537154517822695,0.00937678444042263,0.00881581502671677,-0.0077687651107089,0.0217042224334575,0.045973257755839,0.00469385990670833,0.0284873466248059,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.0346102739424117,0.0453603683226227,-0.0202062562254905,0.0553341349274108,0.0612519385086872,-0.0202062562254905,-0.0202062562254905,0.0338964696245653,-0.0202062562254905,0.0190346134080609,0.0284022224161232,0.0451397927404578,-0.0202062562254905,-0.0202062562254905,0.00422517612744983,0.0088467048559894,0.0568658083432989,-0.0202062562254905,-0.0202062562254905,0.0124994658950122,0.00480886061307933,0.017603490359381,0.0052283260050896,-0.0202062562254905,-0.0202062562254905,-0.0043331970953276,0.00532954225088957,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905,0.00344440789231767,-0.0202062562254905,-0.0202062562254905,-0.0071860090587041,-0.0202062562254905,0.0249287096210534,-0.0202062562254905,-0.0017717771085261,-0.0202062562254905,-0.00397678605731607,-0.0202062562254905,-0.0202062562254905,0.00064648879878621,-0.0202062562254905,-0.0202062562254905,0.0102241068670245,0.00797047195094097,-0.0202062562254905,-0.0202062562254905,-0.0202062562254905
 +
|coexpression_dpi_cluster_scores_median=0,0.250483421051503,0.511089531771687,0.840112951990643,0.718180349187112,0.369778623225151,0.380514389891372,0.467881743499917,0.0572052190895671,0.0913378685245542,0,0.0333321253665857,0.342107724764957,0.395526776118203,0,0.019457383856646,0,0.0584595929718294,0,0,0.327790795544868,0,0,0.0644551523736777,0,0.457490675317125,0.269868638010351,0.256892194180897,0.0755555083173967,0,0.0869754197833955,0.463159893459509,0.208189948540879,0,0.649940057280796,0.390949866342222,0.694943220893472,0.353261102458606,0.190126916405428,0,0.441647142913664,0.226095853111613,0,0.0514985917256918,0.0419359757688424,0,0,0.0856562580541553,0,0,0,0,0.22301034595168,0.389294454188438,0.223284998180554,0,0,0,0,0.123786154496519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.678357956643727,0,0,0,0,0,0.0468926732033539,0,0,0,0.13344402724261,0,0,0,0,0,0,0.0469568706916304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0219679676454349,0,0.0491463288895459,0,0,0,0,0,0,0,0,0.00467752146303847,0,0.0509235292940968,0,0,0,0,0,0,0,0.0523528812100954,0,0,0.0241604874931534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0507781722180226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0181846477038741,0.0167360847245369,0.217864893504226,0,0.0182515825462632,0,0.0287553405056531,0,0,0.0163682758962038,0,0,0,0,0.0351760491568935,0,0,0.0173153472445669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0481354699899057,0,0,0,0,0,0,0.0873549591356574,0,0,0,0,0,0,0,0,0.0632133599302364,0,0,0,0,0,0,0,0,0,0,0,0,0.12724725138213,0.0112857234718881,0,0.0843392403965415,0.0709019855629759,0.0106624728613171,0,0,0,0.0228236731421365,0,0.0662835200988411,0,0,0,0,0.111087966368681,0,0,0,0,0,0,0,0,0.107177024667156,0,0,0,0,0,0,0,0,0,0.100975358632432,0.0529304404135566,0,0.796751263985661,0,0,0,0,0,0,0,0,0.171190417567041,0.588361506018078,0.119259559192106,0,0.0424616899933645,0,0,0,0,0,0.0417740847988257,0.031895734489288,0,0.0403878614760544,0,0.0306097361796376,0,0,0,0,0,0,0.0124216355989731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0669612933221274,0,0,0,0,0.081359932135904,0,0,0,0,0.0139354862310326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 
|gostat_on_MCL_coexpression=
 
|gostat_on_MCL_coexpression=
 
}}
 
}}

Revision as of 04:17, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:52045386..52045399,-p@chr11:52045386..52045399
-
Mm9::chr11:69714630..69714645,+p@chr11:69714630..69714645
+
Mm9::chr17:24833605..24833609,+p10@Noxo1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}