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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0896964873768703,0,0,0,0.195919086892867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554037262465759,0.225301871178984,0.805978517525808,0.690077164971779,0.44593214273782,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.16338070954688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674662332002395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101901855392646,0,0,0,0,0,0,0,0,0,0,0.0773548534010084,0,0.361128530468774,0.600659208620972,0,0,0,0,0,0,0,0,0,0,0.339612509514132,0,0,0,0,0,0,0,0,0,0,0.241616673082865,0.117946305307076,0.177582020809476,0.417401390216495,0.641186930020927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90304701999167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0896964873768703,0,0,0,0.195919086892867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554037262465759,0.225301871178984,0.805978517525808,0.690077164971779,0.44593214273782,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.16338070954688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674662332002395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101901855392646,0,0,0,0,0,0,0,0,0,0,0.0773548534010084,0,0.361128530468774,0.600659208620972,0,0,0,0,0,0,0,0,0,0,0.339612509514132,0,0,0,0,0,0,0,0,0,0,0.241616673082865,0.117946305307076,0.177582020809476,0.417401390216495,0.641186930020927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90304701999167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 
|gostat_on_MCL_coexpression=
 
|gostat_on_MCL_coexpression=
 +
|ontology_enrichment_celltype=CL:0000181!1.54e-14!5;CL:0000417!1.54e-14!5;CL:0000668!1.54e-14!5;CL:0000412!1.54e-14!5;CL:0000182!1.54e-14!5
 +
|ontology_enrichment_disease=
 +
|ontology_enrichment_uberon=UBERON:0009854!2.33e-25!23;UBERON:0009856!2.33e-25!23;UBERON:0002107!3.78e-22!22;UBERON:0007499!3.78e-22!22;UBERON:0006925!3.78e-22!22;UBERON:0009497!3.78e-22!22;UBERON:0000015!3.78e-22!22;UBERON:0002423!3.78e-22!22;UBERON:0006235!3.78e-22!22;UBERON:0008835!3.78e-22!22;UBERON:0003894!3.78e-22!22;UBERON:0004161!3.78e-22!22;UBERON:0008836!3.78e-22!22;UBERON:0002365!2.79e-19!25;UBERON:0002330!2.79e-19!25;UBERON:0001007!1.78e-10!116;UBERON:0001555!1.78e-10!116;UBERON:0007026!1.78e-10!116;UBERON:0004119!3.02e-10!118;UBERON:0000925!3.02e-10!118;UBERON:0006595!3.02e-10!118;UBERON:0005256!6.48e-10!45;UBERON:0004921!1.99e-09!114;UBERON:0003914!2.05e-09!47;UBERON:0005172!5.88e-09!49;UBERON:0005173!5.88e-09!49;UBERON:0002417!5.88e-09!49;UBERON:0000916!5.88e-09!49;UBERON:0003929!8.80e-08!55;UBERON:0002368!5.54e-07!60;UBERON:0003104!7.73e-07!61;UBERON:0009142!7.73e-07!61
 
}}
 
}}

Revision as of 11:03, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:89106784..89106801,+p@chr3:89106784..89106801
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Mm9::chr3:89106809..89106820,+p@chr3:89106809..89106820
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Mm9::chr8:95794246..95794254,-p@chr8:95794246..95794254
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
metabolising cell1.54e-145
endopolyploid cell1.54e-145
parenchymal cell1.54e-145
polyploid cell1.54e-145
hepatocyte1.54e-145

Uber Anatomy
Ontology termp-valuen
digestive tract diverticulum2.33e-2523
sac2.33e-2523
liver3.78e-2222
epithelial sac3.78e-2222
digestive gland3.78e-2222
epithelium of foregut-midgut junction3.78e-2222
anatomical boundary3.78e-2222
hepatobiliary system3.78e-2222
foregut-midgut junction3.78e-2222
hepatic diverticulum3.78e-2222
liver primordium3.78e-2222
septum transversum3.78e-2222
liver bud3.78e-2222
exocrine gland2.79e-1925
exocrine system2.79e-1925
digestive system1.78e-10116
digestive tract1.78e-10116
primitive gut1.78e-10116
endoderm-derived structure3.02e-10118
endoderm3.02e-10118
presumptive endoderm3.02e-10118
trunk mesenchyme6.48e-1045
subdivision of digestive tract1.99e-09114
epithelial tube2.05e-0947
abdomen element5.88e-0949
abdominal segment element5.88e-0949
abdominal segment of trunk5.88e-0949
abdomen5.88e-0949
gut epithelium8.80e-0855
endocrine gland5.54e-0760
mesenchyme7.73e-0761
entire embryonic mesenchyme7.73e-0761


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}