MCL coexpression mm9:375

Phase1 CAGE Peaks

	Short description
Mm9::chr10:127398581..127398605,+	p@chr10:127398581..127398605 +
Mm9::chr11:52060053..52060061,+	p@chr11:52060053..52060061 +
Mm9::chr12:107697344..107697367,+	p1@ENSMUST00000167139
Mm9::chr12:24588010..24588052,+	p@chr12:24588010..24588052 +
Mm9::chr12:7604740..7604741,+	p@chr12:7604740..7604741 +
Mm9::chr13:30823618..30823626,+	p1@ENSMUST00000120583
Mm9::chr13:83826797..83826824,+	p@chr13:83826797..83826824 +
Mm9::chr14:13700032..13700054,+	p1@ENSMUST00000022260
Mm9::chr14:39193635..39193657,+	p1@Gm3386
Mm9::chr16:42955668..42955678,+	p4@BC002163
Mm9::chr17:47547456..47547498,+	p@chr17:47547456..47547498 +
Mm9::chr2:25398946..25398959,+	p1@ENSMUST00000121701
Mm9::chr3:18433512..18433515,+	p1@ENSMUST00000069626
Mm9::chr4:129013260..129013285,+	p3@Zbtb8os
Mm9::chr5:138056838..138056849,+	p1@ENSMUST00000117679
Mm9::chr5:42158898..42158902,+	p@chr5:42158898..42158902 +
Mm9::chr7:98120896..98120913,+	p@chr7:98120896..98120913 +
Mm9::chr8:99687664..99687683,+	p@chr8:99687664..99687683 +
Mm9::chrX:153452085..153452103,-	p1@ENSMUST00000120749
Mm9::chrX:5561787..5561828,+	p1@ENSMUST00000119984

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

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Cell Type

Ontology term	p-value	n
somatic cell	2.59e-19	118
animal cell	1.65e-17	115
eukaryotic cell	1.65e-17	115
epithelial cell	1.29e-16	25
hematopoietic cell	4.69e-15	32
hematopoietic oligopotent progenitor cell	4.69e-15	32
hematopoietic stem cell	4.69e-15	32
angioblastic mesenchymal cell	4.69e-15	32
hematopoietic multipotent progenitor cell	4.69e-15	32
connective tissue cell	4.50e-14	46
mesenchymal cell	4.50e-14	46
endo-epithelial cell	9.98e-14	15
motile cell	6.41e-13	54
hematopoietic lineage restricted progenitor cell	8.81e-13	25
endodermal cell	3.52e-12	20
stem cell	1.32e-10	97
lymphoid lineage restricted progenitor cell	1.11e-09	12
intestinal epithelial cell	1.17e-09	9
epithelial cell of alimentary canal	1.17e-09	9
leukocyte	3.53e-09	17
nongranular leukocyte	3.53e-09	17
T cell	9.75e-09	11
pro-T cell	9.75e-09	11
mature alpha-beta T cell	1.01e-08	9
alpha-beta T cell	1.01e-08	9
immature T cell	1.01e-08	9
mature T cell	1.01e-08	9
immature alpha-beta T cell	1.01e-08	9
lymphocyte	1.04e-08	13
common lymphoid progenitor	1.04e-08	13
columnar/cuboidal epithelial cell	3.31e-08	7
CD4-positive, alpha-beta T cell	7.05e-08	8
nucleate cell	8.86e-08	16
common myeloid progenitor	9.90e-08	19
somatic stem cell	1.42e-07	91
multi fate stem cell	1.42e-07	91
brush border epithelial cell	1.49e-07	6
gut absorptive cell	1.49e-07	6
absorptive cell	1.49e-07	6
enterocyte	1.49e-07	6

Uber Anatomy

Ontology term	p-value	n
mucosa	3.70e-14	15
connective tissue	4.50e-14	46
intestinal mucosa	1.09e-11	13
anatomical wall	1.09e-11	13
wall of intestine	1.09e-11	13
gastrointestinal system mucosa	1.09e-11	13
simple columnar epithelium	6.18e-11	11
epithelium of mucosa	1.17e-09	9
gastrointestinal system epithelium	1.17e-09	9
intestinal epithelium	1.17e-09	9
organ component layer	3.17e-07	24

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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