MCL coexpression mm9:397
From FANTOM5_SSTAR
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances | 0.0165945545155982 |
| GO:0043492 | ATPase activity, coupled to movement of substances | 0.0165945545155982 |
| GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.0165945545155982 |
| GO:0015399 | primary active transmembrane transporter activity | 0.0165945545155982 |
| GO:0015405 | P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.0165945545155982 |
| GO:0042910 | xenobiotic transporter activity | 0.0165945545155982 |
| GO:0008559 | xenobiotic-transporting ATPase activity | 0.0165945545155982 |
| GO:0015239 | multidrug transporter activity | 0.0193571315492903 |
| GO:0046581 | intercellular canaliculus | 0.0300962493678044 |
| GO:0042623 | ATPase activity, coupled | 0.0308035786832829 |
| GO:0016887 | ATPase activity | 0.0354472679943566 |
| GO:0042176 | regulation of protein catabolic process | 0.0354472679943566 |
| GO:0015893 | drug transport | 0.0358958214104973 |
| GO:0009894 | regulation of catabolic process | 0.0358958214104973 |
| GO:0015238 | drug transporter activity | 0.0360739735558713 |
| GO:0022804 | active transmembrane transporter activity | 0.0371635418739551 |
| GO:0048029 | monosaccharide binding | 0.0476900747764418 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| transporting cell | 2.44e-21 | 3 |
| M cell of gut | 2.44e-21 | 3 |
| brush border epithelial cell | 2.00e-18 | 6 |
| gut absorptive cell | 2.00e-18 | 6 |
| absorptive cell | 2.00e-18 | 6 |
| enterocyte | 2.00e-18 | 6 |
| columnar/cuboidal epithelial cell | 7.62e-16 | 7 |
| epithelial cell | 5.90e-13 | 25 |
| intestinal epithelial cell | 2.16e-12 | 9 |
| epithelial cell of alimentary canal | 2.16e-12 | 9 |
| defensive cell | 1.71e-09 | 7 |
| endo-epithelial cell | 1.57e-07 | 15 |
| Ontology term | p-value | n |
|---|---|---|
| mucosa | 1.82e-28 | 15 |
| lymphoid system | 1.78e-21 | 3 |
| intestinal mucosa | 2.15e-18 | 13 |
| anatomical wall | 2.15e-18 | 13 |
| wall of intestine | 2.15e-18 | 13 |
| gastrointestinal system mucosa | 2.15e-18 | 13 |
| organ component layer | 1.41e-17 | 24 |
| gut-associated lymphoid tissue | 2.51e-15 | 2 |
| mucosa-associated lymphoid tissue | 2.51e-15 | 2 |
| lymphoid tissue | 2.51e-15 | 2 |
| epithelium of mucosa | 2.16e-12 | 9 |
| gastrointestinal system epithelium | 2.16e-12 | 9 |
| intestinal epithelium | 2.16e-12 | 9 |
| simple columnar epithelium | 3.45e-10 | 11 |
| ileal mucosa | 9.30e-10 | 3 |
| ileum | 9.30e-10 | 3 |
| mucosa of small intestine | 9.30e-10 | 3 |
| wall of small intestine | 9.30e-10 | 3 |
| egg chamber | 1.56e-08 | 1 |
| lymph node | 7.68e-08 | 1 |
| axillary lymph node | 7.68e-08 | 1 |
| peripheral lymph node | 7.68e-08 | 1 |
| shoulder | 7.68e-08 | 1 |
| intestine | 1.46e-07 | 31 |
| small intestine | 1.54e-07 | 4 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
