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MCL coexpression mm9:410

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:115254412..115254425,+p6@Tspan8
Mm9::chr10:115254516..115254545,+p1@Tspan8
Mm9::chr10:115254555..115254570,+p3@Tspan8
Mm9::chr10:58866149..58866181,+p3@Pla2g12b
Mm9::chr11:118277148..118277155,-p9@Cant1
Mm9::chr12:56478126..56478145,+p@chr12:56478126..56478145
+
Mm9::chr15:78681575..78681587,-p@chr15:78681575..78681587
-
Mm9::chr15:78681809..78681834,-p@chr15:78681809..78681834
-
Mm9::chr15:78685947..78685966,-p1@Lgals2
Mm9::chr16:6698312..6698317,+p@chr16:6698312..6698317
+
Mm9::chr16:97881133..97881147,-p@chr16:97881133..97881147
-
Mm9::chr18:61795043..61795050,-p@chr18:61795043..61795050
-
Mm9::chr18:64820812..64820837,+p@chr18:64820812..64820837
+
Mm9::chr4:141157583..141157590,-p@chr4:141157583..141157590
-
Mm9::chr5:3515189..3515238,+p@chr5:3515189..3515238
+
Mm9::chr7:121989818..121989837,+p@chr7:121989818..121989837
+
Mm9::chr7:121989839..121989852,+p@chr7:121989839..121989852
+
Mm9::chr7:30041431..30041435,-p@chr7:30041431..30041435
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0004382guanosine-diphosphatase activity0.00624554867692982
GO:0045134uridine-diphosphatase activity0.00624554867692982
GO:0009191ribonucleoside diphosphate catabolic process0.0145657623539214
GO:0009185ribonucleoside diphosphate metabolic process0.0145657623539214
GO:0009134nucleoside diphosphate catabolic process0.0145657623539214
GO:0009261ribonucleotide catabolic process0.0145657623539214
GO:0017110nucleoside-diphosphatase activity0.0178312301087074
GO:0009132nucleoside diphosphate metabolic process0.0202780234579342
GO:0004623phospholipase A2 activity0.024939110969952
GO:0009056catabolic process0.024939110969952
GO:0009166nucleotide catabolic process0.024939110969952
GO:0005783endoplasmic reticulum0.0373538868321715
GO:0004620phospholipase activity0.0420619873103809
GO:0005509calcium ion binding0.0420619873103809



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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