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|coexpression_dpi_cluster_scores_median=0,0.229925105835837,0.162862766291676,0.96220513967641,0.954933533740599,0.0673979504369913,0.380514389891372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.859720839478819,0.944478504693811,0.197068726315728,0.269868638010351,0.15562217221269,0.563519988889442,0.177265236423641,0.0869754197833955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123988367667141,0.101901855392646,0,0,0,0,0,0,0,0.0662136857075299,0,0,0,0,0.0849828766602549,0.0788703512227347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 
|coexpression_dpi_cluster_scores_median=0,0.229925105835837,0.162862766291676,0.96220513967641,0.954933533740599,0.0673979504369913,0.380514389891372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.859720839478819,0.944478504693811,0.197068726315728,0.269868638010351,0.15562217221269,0.563519988889442,0.177265236423641,0.0869754197833955,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123988367667141,0.101901855392646,0,0,0,0,0,0,0,0.0662136857075299,0,0,0,0,0.0849828766602549,0.0788703512227347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 
|gostat_on_MCL_coexpression=GO:0004000;adenosine deaminase activity;0.0398565399935037;21744!GO:0019239;deaminase activity;0.0398565399935037;21744!GO:0016814;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines;0.0398565399935037;21744!GO:0003725;double-stranded RNA binding;0.0398565399935037;21744!GO:0007286;spermatid development;0.0449441648598232;21744!GO:0048515;spermatid differentiation;0.0449441648598232;21744!
 
|gostat_on_MCL_coexpression=GO:0004000;adenosine deaminase activity;0.0398565399935037;21744!GO:0019239;deaminase activity;0.0398565399935037;21744!GO:0016814;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines;0.0398565399935037;21744!GO:0003725;double-stranded RNA binding;0.0398565399935037;21744!GO:0007286;spermatid development;0.0449441648598232;21744!GO:0048515;spermatid differentiation;0.0449441648598232;21744!
 +
|ontology_enrichment_celltype=CL:0000239!1.76e-28!6;CL:0000677!1.76e-28!6;CL:0000212!1.76e-28!6;CL:0000584!1.76e-28!6;CL:0000075!2.30e-24!7;CL:0002563!7.21e-19!9;CL:0002251!7.21e-19!9;CL:0000627!7.91e-15!3;CL:0000682!7.91e-15!3;CL:0000066!2.63e-14!25;CL:0002076!3.79e-11!15;CL:0000223!3.06e-08!20
 +
|ontology_enrichment_disease=
 +
|ontology_enrichment_uberon=UBERON:0000344!3.68e-44!15;UBERON:0001242!4.16e-35!13;UBERON:0000060!4.16e-35!13;UBERON:0001262!4.16e-35!13;UBERON:0004786!4.16e-35!13;UBERON:0000160!2.72e-27!31;UBERON:0004923!5.92e-27!24;UBERON:0003350!7.21e-19!9;UBERON:0004808!7.21e-19!9;UBERON:0001277!7.21e-19!9;UBERON:0005409!2.74e-17!47;UBERON:0000485!2.30e-15!11;UBERON:0000331!9.81e-15!3;UBERON:0002116!9.81e-15!3;UBERON:0001204!9.81e-15!3;UBERON:0001168!9.81e-15!3;UBERON:0002108!3.45e-11!4;UBERON:0001962!5.33e-11!2;UBERON:0001961!5.33e-11!2;UBERON:0001744!5.33e-11!2;UBERON:0001007!5.85e-08!116;UBERON:0001555!5.85e-08!116;UBERON:0007026!5.85e-08!116;UBERON:0004119!8.82e-08!118;UBERON:0000925!8.82e-08!118;UBERON:0006595!8.82e-08!118;UBERON:0002465!1.32e-07!3
 
}}
 
}}

Revision as of 11:52, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:34618028..34618035,+p@chr10:34618028..34618035
+
Mm9::chr11:27827040..27827043,+p@chr11:27827040..27827043
+
Mm9::chr14:11955268..11955270,+p@chr14:11955268..11955270
+
Mm9::chr19:6058235..6058246,+p6@Fau
Mm9::chr19:6263605..6263632,+p@chr19:6263605..6263632
+
Mm9::chr3:29631752..29631756,+p@chr3:29631752..29631756
+
Mm9::chr3:36961964..36961971,+p6@Adad1
Mm9::chr7:106312893..106312899,+p@chr7:106312893..106312899
+
Mm9::chr8:102187819..102187863,+p1@ENSMUST00000118240
Mm9::chr8:102187902..102187909,+p2@ENSMUST00000118240
Mm9::chr8:14998614..14998618,-p@chr8:14998614..14998618
-
Mm9::chr8:83335499..83335501,+p@chr8:83335499..83335501
+
Mm9::chr9:78104927..78104933,+p1@Gm3776


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0004000adenosine deaminase activity0.0398565399935037
GO:0019239deaminase activity0.0398565399935037
GO:0016814hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines0.0398565399935037
GO:0003725double-stranded RNA binding0.0398565399935037
GO:0007286spermatid development0.0449441648598232
GO:0048515spermatid differentiation0.0449441648598232



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
mucosa3.68e-4415
intestinal mucosa4.16e-3513
anatomical wall4.16e-3513
wall of intestine4.16e-3513
gastrointestinal system mucosa4.16e-3513
intestine2.72e-2731
organ component layer5.92e-2724
epithelium of mucosa7.21e-199
gastrointestinal system epithelium7.21e-199
intestinal epithelium7.21e-199
gastrointestinal system2.74e-1747
simple columnar epithelium2.30e-1511
ileal mucosa9.81e-153
ileum9.81e-153
mucosa of small intestine9.81e-153
wall of small intestine9.81e-153
small intestine3.45e-114
gut-associated lymphoid tissue5.33e-112
mucosa-associated lymphoid tissue5.33e-112
lymphoid tissue5.33e-112
digestive system5.85e-08116
digestive tract5.85e-08116
primitive gut5.85e-08116
endoderm-derived structure8.82e-08118
endoderm8.82e-08118
presumptive endoderm8.82e-08118
lymphoid system1.32e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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