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MCL coexpression mm9:62: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=-0.0034396367783142,0.0114047161707707,0.00720327806454526,0.0102450203562912,0.0141569206648745,-0.00220181862692426,0.00639774268274748,0.00578397965852118,0.0139407331090826,0.00672776318453417,0.00173514784724948,0.000936727808819855,0.00702414391371646,0.00462545264642364,0.00513131455501736,0.0093364132111496,0.0246331599260184,0.00697763278583607,0.00742202278096626,-0.00227061491468725,0.0352246840897756,0.00451139657710569,0.000258216820690546,0.0190119936220502,0.010218738975804,0.00683418775421862,0.00523234573459891,0.00804899855476209,0.0172192665717973,0.00177323317193128,0.00317307754654713,0.00247090091828897,0.00484455319230837,-0.0166816311412057,0.00786940904652312,0.00161678230774216,0.0038675503983728,0.00917460325822764,-0.00136207491067784,-0.00529702242388393,-0.00141294273370959,0.0047306563083666,-0.000625273807917285,0.0349897682581265,0.0324802141728637,0.0219062734248239,0.0176070192933595,0.00162803542990015,0.00168727908410209,0.00829203712460233,0.0109757333734474,-0.002984314563176,0.0020388046601259,0.00639740137689744,0.00747295955349324,0.0143535403744607,0.0236577781425693,0.0192664876824673,-0.00246017774642606,-0.00152431800280963,-0.00304745500125935,-0.000315285827198374,0.00460654199067325,0.0206977454122627,0.0192567472833052,0.0160644932532696,0.0330485325936658,0.0412028611680347,0.00229009663754799,0.00389011809948288,-0.00176720149306147,0.00845311030242326,0.00179778834814289,-0.00480903572245204,-0.00303183585812718,-0.00456470863005484,0.000341863928089252,0.00377455967810612,0.0002661827565586,-0.00641822041231439,0.00103205209334309,-0.00535470316750576,0.00426218389309801,0.00265637580778377,0.0116206541234089,0.00274558298148353,0.00910249482159528,-0.00340880959273502,-0.00111392156258529,-0.00307235338249659,0.0258716727649642,0.14822029571702,0.337196583274201,0.257905791393126,0.307807597058735,0.299693151325447,0.0981615489984217,-0.00128304863746726,-0.00113594902570996,-0.00354349076914345,-0.0056835711162466,-0.00916623621911337,-0.0107743636683522,-0.0126592569261242,0.0160166938258903,0.0171692036595898,0.0164646166705668,0.27521522629252,0.0103403546425331,0.031957970436261,0.030197711417597,0.0445366384433199,0.060384026368267,0.0458706918287535,0.129524878750492,0.017093444575165,0.187992214023193,0.066218977298683,0.0325778886370645,0.0229695730230171,0.0226880017577026,0.0155397007784429,0.03833680546852,-0.000238891485629451,0.0918644743285579,0.0860317210737924,0.00450460976667174,0.00164190643846332,0.000588485645081138,0.00088487509979016,-0.00401630798507773,0.00731668703150256,-0.0036063841748205,-0.0040363385381186,0.00347835542648632,0.00185917598200785,0.0335468270022537,0.0420278803841466,0.0197011633961149,0.0247993801458137,0.0322030516190292,-8.69706207555305e-06,0.00718817798277698,0.0167573429445367,0.0192613370473712,0.0164850498347428,0.0118614396355733,0.0126675859560996,0.0306238234997592,0.0268128606504161,0.0299899788128787,0.0360399327493669,0.0177190280114473,0.0106136700289759,0.00707619506023675,0.0257233783737397,-0.00362074326818894,-0.00107161232445777,0.000558799202055455,0.0196689793377784,0.0198328687329776,0.0131428085424422,0.0239975083319908,0.0118901621591238,0.0165660441849649,0.0209398694094336,0.0120402783877636,0.0434236028082074,0.0241291882008011,0.028574308976815,0.0392670704697752,0.0308889298588853,0.023476116939958,0.0472548230026429,-0.00228933588134199,0.0095448784114708,0.0378767073259685,0.0268466932263071,0.0144167380920909,0.0117470060704519,0.0130326850822626,0.0218467629297201,0.0204218685791075,0.0304577557212156,0.0924755876957788,0.0492607960014921,0.0591492697897744,0.0875139967413762,0.0514391199291706,0.0925373027420908,0.071798146504048,0.0726180674779487,0.0594964585348501,0.0119315949543164,0.0259568541197379,0.0213874280089055,0.0249747998704611,0.0630988675844598,0.0267649490923766,0.03309273393269,0.0368249066450363,0.081146664244858,0.156282537582837,0.0323046052234455,0.051724580372572,0.0442491836519657,0.0677102673018993,0.110309561016258,0.130043981271166,0.230828145331688,1.15750262235764,0.273861831737921,0.549908617782981,0.486591138956327,0.226869079653729,0.185151558701024,0.16137627948063,0.506644736670171,0.0317868715501213,0.00396452407759515,0.00445798782373253,0.0046832256468981,0.0110705000244664,0.0148485506537703,0.0332388367786991,0.0665358264410347,0.0219883599810327,0.0381313750086797,0.0135848690010469,0.0148025590615523,0.0143448723377332,0.0338710387048279,0.0345832402200648,0.0266017437587601,0.0436171153934044,0.0626861574684512,0.00423660443786668,0.00494826741138822,0.00563116847128346,0.0602766104800112,0.0080836176187856,0.00491476960632194,0.00962125441588492,0.01139895705225,0.0180200904932118,0.0108133334260926,0.012359849155649,0.0225965867199752,0.0152133429411627,-0.00075025322448936,0.042753905988325,0.0523115834697378,0.0501607029894841,0.0376653765105149,0.0510069063723905,0.015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inner membrane;0.00540090617780385;67712,66112,11946,66841,19299!GO:0019866;organelle inner membrane;0.00540090617780385;67712,66112,11946,66841,19299!GO:0031966;mitochondrial membrane;0.00540090617780385;67712,66112,11946,66841,19299!GO:0005740;mitochondrial envelope;0.00649052408456709;67712,66112,11946,66841,19299!GO:0006631;fatty acid metabolic process;0.00981808800090646;74147,19317,235623,14081!GO:0044429;mitochondrial part;0.0105147394166638;67712,66112,11946,66841,19299!GO:0031090;organelle membrane;0.0115630803186878;67712,66112,11946,66841,235623,19299!GO:0031975;envelope;0.0155149459195771;67712,66112,11946,66841,19299!GO:0031967;organelle envelope;0.0155149459195771;67712,66112,11946,66841,19299!GO:0006629;lipid metabolic process;0.0155149459195771;74147,12785,11813,19317,235623,14081!GO:0032787;monocarboxylic acid metabolic process;0.0157069970756058;74147,19317,235623,14081!GO:0005739;mitochondrion;0.0258128411983208;74147,67712,66112,11946,66841,14081,19299!GO:0019752;carboxylic acid metabolic process;0.0258128411983208;74147,14718,19317,235623,14081!GO:0006082;organic acid metabolic process;0.0258128411983208;74147,14718,19317,235623,14081!GO:0044255;cellular lipid metabolic process;0.0356763271790939;74147,12785,19317,235623,14081!GO:0048250;mitochondrial iron ion transport;0.0356763271790939;67712!GO:0009054;electron acceptor activity;0.0356763271790939;66841!GO:0043758;acetate-CoA ligase (ADP-forming) 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|ontology_enrichment_uberon=UBERON:0002107!2.01e-38!22;UBERON:0007499!2.01e-38!22;UBERON:0006925!2.01e-38!22;UBERON:0009497!2.01e-38!22;UBERON:0000015!2.01e-38!22;UBERON:0002423!2.01e-38!22;UBERON:0006235!2.01e-38!22;UBERON:0008835!2.01e-38!22;UBERON:0003894!2.01e-38!22;UBERON:0004161!2.01e-38!22;UBERON:0008836!2.01e-38!22;UBERON:0009854!1.17e-36!23;UBERON:0009856!1.17e-36!23;UBERON:0002365!1.48e-33!25;UBERON:0002330!1.48e-33!25;UBERON:0005172!4.15e-21!49;UBERON:0005173!4.15e-21!49;UBERON:0002417!4.15e-21!49;UBERON:0000916!4.15e-21!49;UBERON:0005256!2.33e-20!45;UBERON:0003914!8.27e-17!47;UBERON:0003104!1.85e-16!61;UBERON:0009142!1.85e-16!61;UBERON:0009569!5.09e-15!66;UBERON:0002368!1.15e-14!60;UBERON:0003929!4.96e-14!55;UBERON:0002530!2.39e-13!65;UBERON:0005177!4.02e-12!79;UBERON:0000949!8.25e-12!72;UBERON:0000490!2.64e-11!66;UBERON:0005911!1.03e-10!69;UBERON:0001041!2.31e-10!80;UBERON:0002100!2.55e-10!90;UBERON:0000466!4.67e-09!79
|tfbs_overrepresentation_for_novel_motifs=0.0372235,0.0636975,0.0378584,1.61378,2.27444,0.324334,0.202094,1.10583,0.260741,0.000194611,0.0374928,0.381849,0.0337094,0.229902,1.18598,0,0.0897166,1.33752,0.330173,0.0531502,1.62767,0.448242,0.0433794,0.689711,0.666439,0.0117141,1.4976,0.205646,0.00634083,0.432088,0.0668039,0.816162,0.0758815,0.234338,0.00101247,0.00869452,4.20233e-08,0.169661,0.86763,0.000168665,1.22852,0.267123,2.59699,1.57437,0.0618081,0.0378516,0.584034,0.104327,1.7841,0.333529,0.154591,0.157398,0.419652,0.0898082,0.464551,0.157836,1.18923,0.0920787,0.376658,0.0902687,0.171759,0.0204548,0.591383,0.140413,0.026216,0.195213,0.0549724,0.620551,0.166158,0.420657,9.72339e-05,0.613879,1.84023e-11,0.121435,1.13595e-06,0.0677815,0.285568,0.244669,0.680603,1.28172,0.305343,0.104593,0.756707,0.0541539,0.057821,1.42894e-12,0.0862882,0.136423,0.169136,0.325989,0.269071,0.059984,0.100104,0.641692,4.20293e-05,0.4309,0.0623411,0.102215,0.0391772,0.00657043,0.05927,0.19662,0.017731,0.425696,0.615299,0.00323485,0.0168767,0.0567638,0.0579044,0.00389598,0.479489,0.206842,0.243447,0.0758618,0.980952,0.355738,1.23126e-07,0.0126528,0.090782,0.256964,0.29743,0.0548945,1.0029,0.37369,0.335375,1.62539,1.00504,0.0951197,0.200748,0.453762,0.606434,0.114633,0.175365,0.182735,0.62202,0.0327823,0.569173,0.813819,0.530804,0.623436,0.303268,0.206323,0.854434,0.591114,0.0712151,0.0730282,1.32364,0.588986,0.456284,0.0102329,0.0375136,4.24304e-15,0.226936,0.0605612,1.17444,0.0363525,0.381691,0.240876,1.33635,0.0117775,0.931484,0.311017,0.289077,0.0534606,0.141664,0.0988077,0.620468,0.513599,6.5837e-06
|tfbs_overrepresentation_jaspar=MA0003.1;1.41274e-14,MA0004.1;0.972881,MA0006.1;0.00406052,MA0007.1;1.45103,MA0009.1;0.110615,MA0014.1;8.19678e-16,MA0017.1;6.05429,MA0019.1;0.201586,MA0024.1;0.175042,MA0025.1;0.171653,MA0027.1;1.08439,MA0028.1;0.0112726,MA0029.1;0.674103,MA0030.1;0.470454,MA0031.1;0.576564,MA0038.1;0.0637759,MA0040.1;0.437871,MA0041.1;1.19812,MA0042.1;2.11213,MA0043.1;0.394257,MA0046.1;0.288016,MA0048.1;0.00712941,MA0050.1;0.215336,MA0051.1;0.130122,MA0052.1;0.127693,MA0055.1;0.0532228,MA0056.1;0,MA0057.1;0.00035557,MA0058.1;0.685706,MA0059.1;0.115204,MA0060.1;0.000440768,MA0061.1;0.103799,MA0063.1;0,MA0066.1;1.14975,MA0067.1;0.0803116,MA0068.1;0.0142405,MA0069.1;1.00365,MA0070.1;0.674015,MA0071.1;2.07657,MA0072.1;0.237246,MA0073.1;5.42885e-06,MA0074.1;0.903279,MA0076.1;0.000800352,MA0077.1;0.0961978,MA0078.1;0.289376,MA0081.1;0.115458,MA0083.1;0.017477,MA0084.1;0.251332,MA0087.1;0.315858,MA0088.1;0.00668219,MA0089.1;0,MA0090.1;0.247189,MA0091.1;0.228656,MA0092.1;0.338253,MA0093.1;0.889321,MA0095.1;0,MA0098.1;0,MA0100.1;0.0998872,MA0101.1;0.13466,MA0103.1;1.27181,MA0105.1;0.019692,MA0106.1;0.0246319,MA0107.1;0.056837,MA0108.2;0.242268,MA0109.1;0,MA0111.1;0.990752,MA0113.1;0.24114,MA0114.1;3.41648,MA0115.1;3.29831,MA0116.1;0.00402935,MA0117.1;0.171901,MA0119.1;0.194546,MA0122.1;0.19298,MA0124.1;0.483445,MA0125.1;0.650526,MA0130.1;0,MA0131.1;0.106217,MA0132.1;0,MA0133.1;0,MA0135.1;0.465662,MA0136.1;0.231089,MA0139.1;0.0418203,MA0140.1;0.0115191,MA0141.1;4.21557,MA0142.1;0.755425,MA0143.1;0.5773,MA0144.1;0.105831,MA0145.1;0.0136662,MA0146.1;8.35903e-06,MA0147.1;0.00181853,MA0148.1;1.32406,MA0149.1;5.40129,MA0062.2;2.47077e-06,MA0035.2;0.0125506,MA0039.2;0,MA0138.2;0.0982529,MA0002.2;0.200091,MA0137.2;0.191357,MA0104.2;0.000186929,MA0047.2;1.7766,MA0112.2;0.400673,MA0065.2;1.73754,MA0150.1;0.0626153,MA0151.1;0,MA0152.1;0.428907,MA0153.1;0.110679,MA0154.1;0.428286,MA0155.1;0.437069,MA0156.1;0.0302647,MA0157.1;0.435247,MA0158.1;0,MA0159.1;0.301585,MA0160.1;2.71636,MA0161.1;0,MA0162.1;3.15258e-12,MA0163.1;5.1581e-06,MA0164.1;1.2763,MA0080.2;0.177328,MA0018.2;0.0025392,MA0099.2;0.282979,MA0079.2;0,MA0102.2;0.78125,MA0258.1;0.27704,MA0259.1;0.00822134,MA0442.1;0
}}

Latest revision as of 14:37, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:105010330..105010333,+p@chr10:105010330..105010333
+
Mm9::chr10:120832307..120832329,+p@chr10:120832307..120832329
+
Mm9::chr10:24640563..24640582,-p@chr10:24640563..24640582
-
Mm9::chr10:76046620..76046627,+p@chr10:76046620..76046627
+
Mm9::chr10:76046637..76046645,+p@chr10:76046637..76046645
+
Mm9::chr10:76551658..76551696,-p@chr10:76551658..76551696
-
Mm9::chr10:80420574..80420593,-p@chr10:80420574..80420593
-
Mm9::chr10:94030873..94030889,+p@chr10:94030873..94030889
+
Mm9::chr11:101232027..101232037,+p@chr11:101232027..101232037
+
Mm9::chr11:101235967..101235987,+p@chr11:101235967..101235987
+
Mm9::chr11:101237937..101237944,+p@chr11:101237937..101237944
+
Mm9::chr11:101237948..101237957,+p@chr11:101237948..101237957
+
Mm9::chr11:101237971..101237984,+p@chr11:101237971..101237984
+
Mm9::chr11:109597957..109597959,+p@chr11:109597957..109597959
+
Mm9::chr11:53164494..53164501,+p10@Aff4
Mm9::chr11:7097783..7097798,+p1@Igfbp1
Mm9::chr11:7097855..7097857,+p5@Igfbp1
Mm9::chr11:7099856..7099859,+p@chr11:7099856..7099859
+
Mm9::chr11:7099887..7099897,+p@chr11:7099887..7099897
+
Mm9::chr11:72940256..72940279,+p@chr11:72940256..72940279
+
Mm9::chr11:74475505..74475525,+p@chr11:74475505..74475525
+
Mm9::chr11:74478852..74478867,+p@chr11:74478852..74478867
+
Mm9::chr11:75246030..75246040,-p@chr11:75246030..75246040
-
Mm9::chr11:75250303..75250319,-p@chr11:75250303..75250319
-
Mm9::chr11:98313147..98313153,+p7@Grb7
Mm9::chr12:105185322..105185351,-p@chr12:105185322..105185351
-
Mm9::chr12:105186369..105186379,-p@chr12:105186369..105186379
-
Mm9::chr12:105189503..105189517,-p@chr12:105189503..105189517
-
Mm9::chr12:105189596..105189622,-p@chr12:105189596..105189622
-
Mm9::chr12:105651813..105651826,+p@chr12:105651813..105651826
+
Mm9::chr12:105652290..105652311,+p@chr12:105652290..105652311
+
Mm9::chr12:110091687..110091718,+p@chr12:110091687..110091718
+
Mm9::chr12:113872170..113872203,+p@chr12:113872170..113872203
+
Mm9::chr12:16544598..16544616,-p@chr12:16544598..16544616
-
Mm9::chr12:16584034..16584047,-p@chr12:16584034..16584047
-
Mm9::chr13:115644327..115644334,-p@chr13:115644327..115644334
-
Mm9::chr13:115644341..115644353,-p@chr13:115644341..115644353
-
Mm9::chr13:30473208..30473233,+p@chr13:30473208..30473233
+
Mm9::chr13:36050719..36050731,+p2@Ppp1r3g
Mm9::chr13:36050741..36050755,+p3@Ppp1r3g
Mm9::chr13:36054996..36055000,+p@chr13:36054996..36055000
+
Mm9::chr13:36055439..36055444,+p@chr13:36055439..36055444
+
Mm9::chr13:36060336..36060340,+p@chr13:36060336..36060340
+
Mm9::chr13:41279802..41279815,-p@chr13:41279802..41279815
-
Mm9::chr13:41290179..41290190,-p@chr13:41290179..41290190
-
Mm9::chr13:60830741..60830746,+p@chr13:60830741..60830746
+
Mm9::chr13:64470127..64470139,-p@chr13:64470127..64470139
-
Mm9::chr13:69208816..69208840,-p@chr13:69208816..69208840
-
Mm9::chr13:69756304..69756323,+p@chr13:69756304..69756323
+
Mm9::chr14:31703347..31703355,+p@chr14:31703347..31703355
+
Mm9::chr14:31728902..31728922,-p3@Itih3
Mm9::chr14:31734925..31734949,-p@chr14:31734925..31734949
-
Mm9::chr14:31735163..31735178,-p@chr14:31735163..31735178
-
Mm9::chr14:32453733..32453761,-p@chr14:32453733..32453761
-
Mm9::chr14:41927544..41927549,+p@chr14:41927544..41927549
+
Mm9::chr14:41928437..41928446,+p@chr14:41928437..41928446
+
Mm9::chr14:41928528..41928559,+p@chr14:41928528..41928559
+
Mm9::chr14:41935994..41936028,+p@chr14:41935994..41936028
+
Mm9::chr14:41936181..41936204,+p@chr14:41936181..41936204
+
Mm9::chr14:41936834..41936851,+p@chr14:41936834..41936851
+
Mm9::chr14:59996459..59996463,-p@chr14:59996459..59996463
-
Mm9::chr14:60026594..60026599,-p@chr14:60026594..60026599
-
Mm9::chr14:60030992..60031011,-p@chr14:60030992..60031011
-
Mm9::chr14:60037906..60037936,-p@chr14:60037906..60037936
-
Mm9::chr14:60059616..60059724,-p1@Setdb2
Mm9::chr14:60059925..60059934,-p3@Setdb2
Mm9::chr14:60059940..60059945,-p6@Setdb2
Mm9::chr14:60060139..60060144,-p7@Setdb2
Mm9::chr14:60060146..60060147,-p10@Setdb2
Mm9::chr14:60060148..60060154,-p5@Setdb2
Mm9::chr14:60171358..60171367,-p@chr14:60171358..60171367
-
Mm9::chr14:65918185..65918223,-p@chr14:65918185..65918223
-
Mm9::chr14:66728986..66729012,-p@chr14:66728986..66729012
-
Mm9::chr14:69866953..69866998,-p@chr14:69866953..69866998
-
Mm9::chr15:82623000..82623010,-p@chr15:82623000..82623010
-
Mm9::chr15:85617599..85617607,+p@chr15:85617599..85617607
+
Mm9::chr16:13672712..13672721,-p@chr16:13672712..13672721
-
Mm9::chr16:17336638..17336647,+p@chr16:17336638..17336647
+
Mm9::chr16:20107610..20107633,+p@chr16:20107610..20107633
+
Mm9::chr16:21762259..21762278,-p@chr16:21762259..21762278
-
Mm9::chr16:21762652..21762659,-p@chr16:21762652..21762659
-
Mm9::chr16:21762679..21762686,-p@chr16:21762679..21762686
-
Mm9::chr16:21762968..21762978,-p@chr16:21762968..21762978
-
Mm9::chr16:21762980..21762984,-p@chr16:21762980..21762984
-
Mm9::chr16:21763054..21763088,-p@chr16:21763054..21763088
-
Mm9::chr16:21766620..21766647,-p@chr16:21766620..21766647
-
Mm9::chr16:21775562..21775568,-p@chr16:21775562..21775568
-
Mm9::chr16:21780395..21780399,-p@chr16:21780395..21780399
-
Mm9::chr16:22896495..22896505,+p@chr16:22896495..22896505
+
Mm9::chr16:22898238..22898254,+p@chr16:22898238..22898254
+
Mm9::chr16:22898855..22898877,+p@chr16:22898855..22898877
+
Mm9::chr16:22899088..22899115,+p@chr16:22899088..22899115
+
Mm9::chr16:22961312..22961320,+p@chr16:22961312..22961320
+
Mm9::chr16:23067759..23067783,+p@chr16:23067759..23067783
+
Mm9::chr16:5009251..5009290,-p@chr16:5009251..5009290
-
Mm9::chr17:10402287..10402298,-p@chr17:10402287..10402298
-
Mm9::chr17:24562436..24562471,+p@chr17:24562436..24562471
+
Mm9::chr17:26219024..26219043,-p@chr17:26219024..26219043
-
Mm9::chr17:31985777..31985792,-p@chr17:31985777..31985792
-
Mm9::chr17:34998113..34998124,-p@chr17:34998113..34998124
-
Mm9::chr17:34998766..34998782,-p@chr17:34998766..34998782
-
Mm9::chr17:74179994..74180035,+p@chr17:74179994..74180035
+
Mm9::chr18:36688859..36688862,+p4@Slc4a9
Mm9::chr18:36688877..36688895,+p2@Slc4a9
Mm9::chr18:36688897..36688905,+p3@Slc4a9
Mm9::chr18:61276937..61276946,+p@chr18:61276937..61276946
+
Mm9::chr18:78017494..78017536,+p2@Atp5a1
Mm9::chr18:78018585..78018636,+p3@Atp5a1
Mm9::chr19:32712104..32712150,+p@chr19:32712104..32712150
+
Mm9::chr19:3352500..3352516,+p@chr19:3352500..3352516
+
Mm9::chr19:43574773..43574782,-p@chr19:43574773..43574782
-
Mm9::chr19:43574969..43574980,-p@chr19:43574969..43574980
-
Mm9::chr19:43579074..43579085,-p5@Got1
Mm9::chr19:43581489..43581519,-p@chr19:43581489..43581519
-
Mm9::chr19:43584696..43584708,-p@chr19:43584696..43584708
-
Mm9::chr19:43595849..43595854,-p@chr19:43595849..43595854
-
Mm9::chr19:43598859..43598863,-p4@Got1
Mm9::chr19:43599246..43599251,-p2@Got1
Mm9::chr19:4603126..4603145,+p@chr19:4603126..4603145
+
Mm9::chr19:4604533..4604541,+p@chr19:4604533..4604541
+
Mm9::chr19:4609920..4609940,+p@chr19:4609920..4609940
+
Mm9::chr19:46728493..46728517,+p@chr19:46728493..46728517
+
Mm9::chr19:46728595..46728624,+p@chr19:46728595..46728624
+
Mm9::chr19:46728861..46728908,+p@chr19:46728861..46728908
+
Mm9::chr19:46729311..46729333,+p@chr19:46729311..46729333
+
Mm9::chr19:46729419..46729449,+p@chr19:46729419..46729449
+
Mm9::chr19:55170214..55170254,-p@chr19:55170214..55170254
-
Mm9::chr19:55171231..55171244,-p@chr19:55171231..55171244
-
Mm9::chr19:55171374..55171378,-p@chr19:55171374..55171378
-
Mm9::chr1:132629195..132629199,-p@chr1:132629195..132629199
-
Mm9::chr1:174824711..174824728,-p@chr1:174824711..174824728
-
Mm9::chr1:174824729..174824734,-p@chr1:174824729..174824734
-
Mm9::chr1:183141303..183141327,-p@chr1:183141303..183141327
-
Mm9::chr1:186634859..186634870,-p@chr1:186634859..186634870
-
Mm9::chr1:67212018..67212067,+p@chr1:67212018..67212067
+
Mm9::chr1:71672804..71672825,-p@chr1:71672804..71672825
-
Mm9::chr1:71678650..71678669,-p@chr1:71678650..71678669
-
Mm9::chr1:71697164..71697190,-p@chr1:71697164..71697190
-
Mm9::chr1:72898878..72898890,+p@chr1:72898878..72898890
+
Mm9::chr1:87949618..87949647,+p@chr1:87949618..87949647
+
Mm9::chr1:87950440..87950454,+p@chr1:87950440..87950454
+
Mm9::chr2:10024442..10024449,-p@chr2:10024442..10024449
-
Mm9::chr2:127995486..127995495,+p@chr2:127995486..127995495
+
Mm9::chr2:158150323..158150330,+p@chr2:158150323..158150330
+
Mm9::chr2:24588721..24588729,-p@chr2:24588721..24588729
-
Mm9::chr2:28325355..28325373,+p@chr2:28325355..28325373
+
Mm9::chr2:79209015..79209025,-p@chr2:79209015..79209025
-
Mm9::chr3:116237676..116237690,+p@chr3:116237676..116237690
+
Mm9::chr3:121517712..121517734,-p8@Abcd3
Mm9::chr3:67386800..67386820,+p@chr3:67386800..67386820
+
Mm9::chr3:79432558..79432569,-p4@Etfdh
Mm9::chr3:82834969..82834976,+p@chr3:82834969..82834976
+
Mm9::chr3:82850608..82850636,-p@chr3:82850608..82850636
-
Mm9::chr3:96360173..96360180,-p@chr3:96360173..96360180
-
Mm9::chr3:96363037..96363067,+p2@Txnip
Mm9::chr3:96364220..96364241,+p4@Txnip
Mm9::chr3:98085398..98085415,+p@chr3:98085398..98085415
+
Mm9::chr3:98090930..98090931,+p@chr3:98090930..98090931
+
Mm9::chr3:98094814..98094830,+p@chr3:98094814..98094830
+
Mm9::chr3:98103129..98103149,+p@chr3:98103129..98103149
+
Mm9::chr3:98106532..98106560,+p@chr3:98106532..98106560
+
Mm9::chr3:98112946..98112965,+p@chr3:98112946..98112965
+
Mm9::chr3:98113011..98113022,+p@chr3:98113011..98113022
+
Mm9::chr3:98113078..98113092,+p@chr3:98113078..98113092
+
Mm9::chr4:115159495..115159507,-p@chr4:115159495..115159507
-
Mm9::chr4:115164719..115164732,-p@chr4:115164719..115164732
-
Mm9::chr4:129164331..129164342,+p@chr4:129164331..129164342
+
Mm9::chr4:129164402..129164416,+p@chr4:129164402..129164416
+
Mm9::chr4:138946746..138946765,+p@chr4:138946746..138946765
+
Mm9::chr4:141264317..141264329,-p@chr4:141264317..141264329
-
Mm9::chr4:70214726..70214768,+p@chr4:70214726..70214768
+
Mm9::chr4:70243450..70243457,+p@chr4:70243450..70243457
+
Mm9::chr4:71859342..71859353,-p@chr4:71859342..71859353
-
Mm9::chr4:86303273..86303291,-p@chr4:86303273..86303291
-
Mm9::chr5:120969718..120969761,+p@chr5:120969718..120969761
+
Mm9::chr5:123689685..123689727,+p@chr5:123689685..123689727
+
Mm9::chr5:136173121..136173124,+p@chr5:136173121..136173124
+
Mm9::chr5:136204526..136204537,+p@chr5:136204526..136204537
+
Mm9::chr5:136209734..136209749,+p@chr5:136209734..136209749
+
Mm9::chr5:136210826..136210846,+p@chr5:136210826..136210846
+
Mm9::chr5:140593994..140594010,-p@chr5:140593994..140594010
-
Mm9::chr5:140594014..140594023,-p@chr5:140594014..140594023
-
Mm9::chr5:20392008..20392016,+p@chr5:20392008..20392016
+
Mm9::chr5:35387912..35387920,+p@chr5:35387912..35387920
+
Mm9::chr5:35387924..35387934,+p@chr5:35387924..35387934
+
Mm9::chr5:51431337..51431344,+p@chr5:51431337..51431344
+
Mm9::chr6:116600743..116600747,+p5@8430408G22Rik
Mm9::chr6:116601797..116601814,+p@chr6:116601797..116601814
+
Mm9::chr6:116601894..116601903,+p@chr6:116601894..116601903
+
Mm9::chr6:116602248..116602281,+p@chr6:116602248..116602281
+
Mm9::chr6:125540878..125540886,+p@chr6:125540878..125540886
+
Mm9::chr6:136895564..136895569,-p@chr6:136895564..136895569
-
Mm9::chr6:72092166..72092185,+p@chr6:72092166..72092185
+
Mm9::chr6:72306098..72306121,+p@chr6:72306098..72306121
+
Mm9::chr6:72307947..72307960,+p@chr6:72307947..72307960
+
Mm9::chr6:87794011..87794082,-p@chr6:87794011..87794082
-
Mm9::chr7:13615857..13615886,+p4@Trim28
Mm9::chr7:149839571..149839592,-p@chr7:149839571..149839592
-
Mm9::chr7:20263296..20263301,-p4@Apoc2
Mm9::chr7:26030459..26030472,-p@chr7:26030459..26030472
-
Mm9::chr7:36376782..36376790,+p@chr7:36376782..36376790
+
Mm9::chr8:10435789..10435799,+p@chr8:10435789..10435799
+
Mm9::chr8:10865930..10865936,-p@chr8:10865930..10865936
-
Mm9::chr8:10899947..10899956,+p2@uc009kuw.1
p2@uc009kux.1
Mm9::chr8:10902046..10902061,+p@chr8:10902046..10902061
+
Mm9::chr8:112521472..112521476,+p@chr8:112521472..112521476
+
Mm9::chr8:112522903..112522925,+p@chr8:112522903..112522925
+
Mm9::chr8:112523147..112523161,+p@chr8:112523147..112523161
+
Mm9::chr8:127087771..127087805,-p@chr8:127087771..127087805
-
Mm9::chr8:46362390..46362394,-p@chr8:46362390..46362394
-
Mm9::chr8:47604575..47604586,+p@chr8:47604575..47604586
+
Mm9::chr8:47612553..47612599,+p7@Acsl1
Mm9::chr8:47619928..47619954,+p@chr8:47619928..47619954
+
Mm9::chr8:47620318..47620356,+p@chr8:47620318..47620356
+
Mm9::chr8:47620556..47620576,+p@chr8:47620556..47620576
+
Mm9::chr9:103130275..103130312,-p@chr9:103130275..103130312
-
Mm9::chr9:105322776..105322787,-p@chr9:105322776..105322787
-
Mm9::chr9:110246667..110246684,+p9@Scap
Mm9::chr9:110246689..110246708,+p7@Scap
Mm9::chr9:110246713..110246733,+p8@Scap
Mm9::chr9:110246755..110246766,+p15@Scap
Mm9::chr9:36587423..36587435,-p@chr9:36587423..36587435
-
Mm9::chr9:44208606..44208618,+p@chr9:44208606..44208618
+
Mm9::chr9:44210569..44210577,+p@chr9:44210569..44210577
+
Mm9::chr9:46078635..46078656,+p@chr9:46078635..46078656
+
Mm9::chrX:49782013..49782028,-p@chrX:49782013..49782028
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042579microbody0.00332900356243749
GO:0005777peroxisome0.00332900356243749
GO:0005743mitochondrial inner membrane0.00540090617780385
GO:0019866organelle inner membrane0.00540090617780385
GO:0031966mitochondrial membrane0.00540090617780385
GO:0005740mitochondrial envelope0.00649052408456709
GO:0006631fatty acid metabolic process0.00981808800090646
GO:0044429mitochondrial part0.0105147394166638
GO:0031090organelle membrane0.0115630803186878
GO:0031975envelope0.0155149459195771
GO:0031967organelle envelope0.0155149459195771
GO:0006629lipid metabolic process0.0155149459195771
GO:0032787monocarboxylic acid metabolic process0.0157069970756058
GO:0005739mitochondrion0.0258128411983208
GO:0019752carboxylic acid metabolic process0.0258128411983208
GO:0006082organic acid metabolic process0.0258128411983208
GO:0044255cellular lipid metabolic process0.0356763271790939
GO:0048250mitochondrial iron ion transport0.0356763271790939
GO:0009054electron acceptor activity0.0356763271790939
GO:0043758acetate-CoA ligase (ADP-forming) activity0.0356763271790939



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell5.14e-155
endopolyploid cell5.14e-155
parenchymal cell5.14e-155
polyploid cell5.14e-155
hepatocyte5.14e-155

Uber Anatomy
Ontology termp-valuen
liver2.01e-3822
epithelial sac2.01e-3822
digestive gland2.01e-3822
epithelium of foregut-midgut junction2.01e-3822
anatomical boundary2.01e-3822
hepatobiliary system2.01e-3822
foregut-midgut junction2.01e-3822
hepatic diverticulum2.01e-3822
liver primordium2.01e-3822
septum transversum2.01e-3822
liver bud2.01e-3822
digestive tract diverticulum1.17e-3623
sac1.17e-3623
exocrine gland1.48e-3325
exocrine system1.48e-3325
abdomen element4.15e-2149
abdominal segment element4.15e-2149
abdominal segment of trunk4.15e-2149
abdomen4.15e-2149
trunk mesenchyme2.33e-2045
epithelial tube8.27e-1747
mesenchyme1.85e-1661
entire embryonic mesenchyme1.85e-1661
subdivision of trunk5.09e-1566
endocrine gland1.15e-1460
gut epithelium4.96e-1455
gland2.39e-1365
trunk region element4.02e-1279
endocrine system8.25e-1272
unilaminar epithelium2.64e-1166
endo-epithelium1.03e-1069
foregut2.31e-1080
trunk2.55e-1090
immaterial anatomical entity4.67e-0979


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.41274e-14
MA0004.10.972881
MA0006.10.00406052
MA0007.11.45103
MA0009.10.110615
MA0014.18.19678e-16
MA0017.16.05429
MA0019.10.201586
MA0024.10.175042
MA0025.10.171653
MA0027.11.08439
MA0028.10.0112726
MA0029.10.674103
MA0030.10.470454
MA0031.10.576564
MA0038.10.0637759
MA0040.10.437871
MA0041.11.19812
MA0042.12.11213
MA0043.10.394257
MA0046.10.288016
MA0048.10.00712941
MA0050.10.215336
MA0051.10.130122
MA0052.10.127693
MA0055.10.0532228
MA0056.10
MA0057.10.00035557
MA0058.10.685706
MA0059.10.115204
MA0060.10.000440768
MA0061.10.103799
MA0063.10
MA0066.11.14975
MA0067.10.0803116
MA0068.10.0142405
MA0069.11.00365
MA0070.10.674015
MA0071.12.07657
MA0072.10.237246
MA0073.15.42885e-06
MA0074.10.903279
MA0076.10.000800352
MA0077.10.0961978
MA0078.10.289376
MA0081.10.115458
MA0083.10.017477
MA0084.10.251332
MA0087.10.315858
MA0088.10.00668219
MA0089.10
MA0090.10.247189
MA0091.10.228656
MA0092.10.338253
MA0093.10.889321
MA0095.10
MA0098.10
MA0100.10.0998872
MA0101.10.13466
MA0103.11.27181
MA0105.10.019692
MA0106.10.0246319
MA0107.10.056837
MA0108.20.242268
MA0109.10
MA0111.10.990752
MA0113.10.24114
MA0114.13.41648
MA0115.13.29831
MA0116.10.00402935
MA0117.10.171901
MA0119.10.194546
MA0122.10.19298
MA0124.10.483445
MA0125.10.650526
MA0130.10
MA0131.10.106217
MA0132.10
MA0133.10
MA0135.10.465662
MA0136.10.231089
MA0139.10.0418203
MA0140.10.0115191
MA0141.14.21557
MA0142.10.755425
MA0143.10.5773
MA0144.10.105831
MA0145.10.0136662
MA0146.18.35903e-06
MA0147.10.00181853
MA0148.11.32406
MA0149.15.40129
MA0062.22.47077e-06
MA0035.20.0125506
MA0039.20
MA0138.20.0982529
MA0002.20.200091
MA0137.20.191357
MA0104.20.000186929
MA0047.21.7766
MA0112.20.400673
MA0065.21.73754
MA0150.10.0626153
MA0151.10
MA0152.10.428907
MA0153.10.110679
MA0154.10.428286
MA0155.10.437069
MA0156.10.0302647
MA0157.10.435247
MA0158.10
MA0159.10.301585
MA0160.12.71636
MA0161.10
MA0162.13.15258e-12
MA0163.15.1581e-06
MA0164.11.2763
MA0080.20.177328
MA0018.20.0025392
MA0099.20.282979
MA0079.20
MA0102.20.78125
MA0258.10.27704
MA0259.10.00822134
MA0442.10
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