Personal tools

MCL coexpression mm9:62

From FANTOM5_SSTAR

Revision as of 17:43, 26 November 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:105010330..105010333,+p@chr10:105010330..105010333
+
Mm9::chr10:120832307..120832329,+p@chr10:120832307..120832329
+
Mm9::chr10:24640563..24640582,-p@chr10:24640563..24640582
-
Mm9::chr10:76046620..76046627,+p@chr10:76046620..76046627
+
Mm9::chr10:76046637..76046645,+p@chr10:76046637..76046645
+
Mm9::chr10:76551658..76551696,-p@chr10:76551658..76551696
-
Mm9::chr10:80420574..80420593,-p@chr10:80420574..80420593
-
Mm9::chr10:94030873..94030889,+p@chr10:94030873..94030889
+
Mm9::chr11:101232027..101232037,+p@chr11:101232027..101232037
+
Mm9::chr11:101235967..101235987,+p@chr11:101235967..101235987
+
Mm9::chr11:101237937..101237944,+p@chr11:101237937..101237944
+
Mm9::chr11:101237948..101237957,+p@chr11:101237948..101237957
+
Mm9::chr11:101237971..101237984,+p@chr11:101237971..101237984
+
Mm9::chr11:109597957..109597959,+p@chr11:109597957..109597959
+
Mm9::chr11:53164494..53164501,+p10@Aff4
Mm9::chr11:7097783..7097798,+p1@Igfbp1
Mm9::chr11:7097855..7097857,+p5@Igfbp1
Mm9::chr11:7099856..7099859,+p@chr11:7099856..7099859
+
Mm9::chr11:7099887..7099897,+p@chr11:7099887..7099897
+
Mm9::chr11:72940256..72940279,+p@chr11:72940256..72940279
+
Mm9::chr11:74475505..74475525,+p@chr11:74475505..74475525
+
Mm9::chr11:74478852..74478867,+p@chr11:74478852..74478867
+
Mm9::chr11:75246030..75246040,-p@chr11:75246030..75246040
-
Mm9::chr11:75250303..75250319,-p@chr11:75250303..75250319
-
Mm9::chr11:98313147..98313153,+p7@Grb7
Mm9::chr12:105185322..105185351,-p@chr12:105185322..105185351
-
Mm9::chr12:105186369..105186379,-p@chr12:105186369..105186379
-
Mm9::chr12:105189503..105189517,-p@chr12:105189503..105189517
-
Mm9::chr12:105189596..105189622,-p@chr12:105189596..105189622
-
Mm9::chr12:105651813..105651826,+p@chr12:105651813..105651826
+
Mm9::chr12:105652290..105652311,+p@chr12:105652290..105652311
+
Mm9::chr12:110091687..110091718,+p@chr12:110091687..110091718
+
Mm9::chr12:113872170..113872203,+p@chr12:113872170..113872203
+
Mm9::chr12:16544598..16544616,-p@chr12:16544598..16544616
-
Mm9::chr12:16584034..16584047,-p@chr12:16584034..16584047
-
Mm9::chr13:115644327..115644334,-p@chr13:115644327..115644334
-
Mm9::chr13:115644341..115644353,-p@chr13:115644341..115644353
-
Mm9::chr13:30473208..30473233,+p@chr13:30473208..30473233
+
Mm9::chr13:36050719..36050731,+p2@Ppp1r3g
Mm9::chr13:36050741..36050755,+p3@Ppp1r3g
Mm9::chr13:36054996..36055000,+p@chr13:36054996..36055000
+
Mm9::chr13:36055439..36055444,+p@chr13:36055439..36055444
+
Mm9::chr13:36060336..36060340,+p@chr13:36060336..36060340
+
Mm9::chr13:41279802..41279815,-p@chr13:41279802..41279815
-
Mm9::chr13:41290179..41290190,-p@chr13:41290179..41290190
-
Mm9::chr13:60830741..60830746,+p@chr13:60830741..60830746
+
Mm9::chr13:64470127..64470139,-p@chr13:64470127..64470139
-
Mm9::chr13:69208816..69208840,-p@chr13:69208816..69208840
-
Mm9::chr13:69756304..69756323,+p@chr13:69756304..69756323
+
Mm9::chr14:31703347..31703355,+p@chr14:31703347..31703355
+
Mm9::chr14:31728902..31728922,-p3@Itih3
Mm9::chr14:31734925..31734949,-p@chr14:31734925..31734949
-
Mm9::chr14:31735163..31735178,-p@chr14:31735163..31735178
-
Mm9::chr14:32453733..32453761,-p@chr14:32453733..32453761
-
Mm9::chr14:41927544..41927549,+p@chr14:41927544..41927549
+
Mm9::chr14:41928437..41928446,+p@chr14:41928437..41928446
+
Mm9::chr14:41928528..41928559,+p@chr14:41928528..41928559
+
Mm9::chr14:41935994..41936028,+p@chr14:41935994..41936028
+
Mm9::chr14:41936181..41936204,+p@chr14:41936181..41936204
+
Mm9::chr14:41936834..41936851,+p@chr14:41936834..41936851
+
Mm9::chr14:59996459..59996463,-p@chr14:59996459..59996463
-
Mm9::chr14:60026594..60026599,-p@chr14:60026594..60026599
-
Mm9::chr14:60030992..60031011,-p@chr14:60030992..60031011
-
Mm9::chr14:60037906..60037936,-p@chr14:60037906..60037936
-
Mm9::chr14:60059616..60059724,-p1@Setdb2
Mm9::chr14:60059925..60059934,-p3@Setdb2
Mm9::chr14:60059940..60059945,-p6@Setdb2
Mm9::chr14:60060139..60060144,-p7@Setdb2
Mm9::chr14:60060146..60060147,-p10@Setdb2
Mm9::chr14:60060148..60060154,-p5@Setdb2
Mm9::chr14:60171358..60171367,-p@chr14:60171358..60171367
-
Mm9::chr14:65918185..65918223,-p@chr14:65918185..65918223
-
Mm9::chr14:66728986..66729012,-p@chr14:66728986..66729012
-
Mm9::chr14:69866953..69866998,-p@chr14:69866953..69866998
-
Mm9::chr15:82623000..82623010,-p@chr15:82623000..82623010
-
Mm9::chr15:85617599..85617607,+p@chr15:85617599..85617607
+
Mm9::chr16:13672712..13672721,-p@chr16:13672712..13672721
-
Mm9::chr16:17336638..17336647,+p@chr16:17336638..17336647
+
Mm9::chr16:20107610..20107633,+p@chr16:20107610..20107633
+
Mm9::chr16:21762259..21762278,-p@chr16:21762259..21762278
-
Mm9::chr16:21762652..21762659,-p@chr16:21762652..21762659
-
Mm9::chr16:21762679..21762686,-p@chr16:21762679..21762686
-
Mm9::chr16:21762968..21762978,-p@chr16:21762968..21762978
-
Mm9::chr16:21762980..21762984,-p@chr16:21762980..21762984
-
Mm9::chr16:21763054..21763088,-p@chr16:21763054..21763088
-
Mm9::chr16:21766620..21766647,-p@chr16:21766620..21766647
-
Mm9::chr16:21775562..21775568,-p@chr16:21775562..21775568
-
Mm9::chr16:21780395..21780399,-p@chr16:21780395..21780399
-
Mm9::chr16:22896495..22896505,+p@chr16:22896495..22896505
+
Mm9::chr16:22898238..22898254,+p@chr16:22898238..22898254
+
Mm9::chr16:22898855..22898877,+p@chr16:22898855..22898877
+
Mm9::chr16:22899088..22899115,+p@chr16:22899088..22899115
+
Mm9::chr16:22961312..22961320,+p@chr16:22961312..22961320
+
Mm9::chr16:23067759..23067783,+p@chr16:23067759..23067783
+
Mm9::chr16:5009251..5009290,-p@chr16:5009251..5009290
-
Mm9::chr17:10402287..10402298,-p@chr17:10402287..10402298
-
Mm9::chr17:24562436..24562471,+p@chr17:24562436..24562471
+
Mm9::chr17:26219024..26219043,-p@chr17:26219024..26219043
-
Mm9::chr17:31985777..31985792,-p@chr17:31985777..31985792
-
Mm9::chr17:34998113..34998124,-p@chr17:34998113..34998124
-
Mm9::chr17:34998766..34998782,-p@chr17:34998766..34998782
-
Mm9::chr17:74179994..74180035,+p@chr17:74179994..74180035
+
Mm9::chr18:36688859..36688862,+p4@Slc4a9
Mm9::chr18:36688877..36688895,+p2@Slc4a9
Mm9::chr18:36688897..36688905,+p3@Slc4a9
Mm9::chr18:61276937..61276946,+p@chr18:61276937..61276946
+
Mm9::chr18:78017494..78017536,+p2@Atp5a1
Mm9::chr18:78018585..78018636,+p3@Atp5a1
Mm9::chr19:32712104..32712150,+p@chr19:32712104..32712150
+
Mm9::chr19:3352500..3352516,+p@chr19:3352500..3352516
+
Mm9::chr19:43574773..43574782,-p@chr19:43574773..43574782
-
Mm9::chr19:43574969..43574980,-p@chr19:43574969..43574980
-
Mm9::chr19:43579074..43579085,-p5@Got1
Mm9::chr19:43581489..43581519,-p@chr19:43581489..43581519
-
Mm9::chr19:43584696..43584708,-p@chr19:43584696..43584708
-
Mm9::chr19:43595849..43595854,-p@chr19:43595849..43595854
-
Mm9::chr19:43598859..43598863,-p4@Got1
Mm9::chr19:43599246..43599251,-p2@Got1
Mm9::chr19:4603126..4603145,+p@chr19:4603126..4603145
+
Mm9::chr19:4604533..4604541,+p@chr19:4604533..4604541
+
Mm9::chr19:4609920..4609940,+p@chr19:4609920..4609940
+
Mm9::chr19:46728493..46728517,+p@chr19:46728493..46728517
+
Mm9::chr19:46728595..46728624,+p@chr19:46728595..46728624
+
Mm9::chr19:46728861..46728908,+p@chr19:46728861..46728908
+
Mm9::chr19:46729311..46729333,+p@chr19:46729311..46729333
+
Mm9::chr19:46729419..46729449,+p@chr19:46729419..46729449
+
Mm9::chr19:55170214..55170254,-p@chr19:55170214..55170254
-
Mm9::chr19:55171231..55171244,-p@chr19:55171231..55171244
-
Mm9::chr19:55171374..55171378,-p@chr19:55171374..55171378
-
Mm9::chr1:132629195..132629199,-p@chr1:132629195..132629199
-
Mm9::chr1:174824711..174824728,-p@chr1:174824711..174824728
-
Mm9::chr1:174824729..174824734,-p@chr1:174824729..174824734
-
Mm9::chr1:183141303..183141327,-p@chr1:183141303..183141327
-
Mm9::chr1:186634859..186634870,-p@chr1:186634859..186634870
-
Mm9::chr1:67212018..67212067,+p@chr1:67212018..67212067
+
Mm9::chr1:71672804..71672825,-p@chr1:71672804..71672825
-
Mm9::chr1:71678650..71678669,-p@chr1:71678650..71678669
-
Mm9::chr1:71697164..71697190,-p@chr1:71697164..71697190
-
Mm9::chr1:72898878..72898890,+p@chr1:72898878..72898890
+
Mm9::chr1:87949618..87949647,+p@chr1:87949618..87949647
+
Mm9::chr1:87950440..87950454,+p@chr1:87950440..87950454
+
Mm9::chr2:10024442..10024449,-p@chr2:10024442..10024449
-
Mm9::chr2:127995486..127995495,+p@chr2:127995486..127995495
+
Mm9::chr2:158150323..158150330,+p@chr2:158150323..158150330
+
Mm9::chr2:24588721..24588729,-p@chr2:24588721..24588729
-
Mm9::chr2:28325355..28325373,+p@chr2:28325355..28325373
+
Mm9::chr2:79209015..79209025,-p@chr2:79209015..79209025
-
Mm9::chr3:116237676..116237690,+p@chr3:116237676..116237690
+
Mm9::chr3:121517712..121517734,-p8@Abcd3
Mm9::chr3:67386800..67386820,+p@chr3:67386800..67386820
+
Mm9::chr3:79432558..79432569,-p4@Etfdh
Mm9::chr3:82834969..82834976,+p@chr3:82834969..82834976
+
Mm9::chr3:82850608..82850636,-p@chr3:82850608..82850636
-
Mm9::chr3:96360173..96360180,-p@chr3:96360173..96360180
-
Mm9::chr3:96363037..96363067,+p2@Txnip
Mm9::chr3:96364220..96364241,+p4@Txnip
Mm9::chr3:98085398..98085415,+p@chr3:98085398..98085415
+
Mm9::chr3:98090930..98090931,+p@chr3:98090930..98090931
+
Mm9::chr3:98094814..98094830,+p@chr3:98094814..98094830
+
Mm9::chr3:98103129..98103149,+p@chr3:98103129..98103149
+
Mm9::chr3:98106532..98106560,+p@chr3:98106532..98106560
+
Mm9::chr3:98112946..98112965,+p@chr3:98112946..98112965
+
Mm9::chr3:98113011..98113022,+p@chr3:98113011..98113022
+
Mm9::chr3:98113078..98113092,+p@chr3:98113078..98113092
+
Mm9::chr4:115159495..115159507,-p@chr4:115159495..115159507
-
Mm9::chr4:115164719..115164732,-p@chr4:115164719..115164732
-
Mm9::chr4:129164331..129164342,+p@chr4:129164331..129164342
+
Mm9::chr4:129164402..129164416,+p@chr4:129164402..129164416
+
Mm9::chr4:138946746..138946765,+p@chr4:138946746..138946765
+
Mm9::chr4:141264317..141264329,-p@chr4:141264317..141264329
-
Mm9::chr4:70214726..70214768,+p@chr4:70214726..70214768
+
Mm9::chr4:70243450..70243457,+p@chr4:70243450..70243457
+
Mm9::chr4:71859342..71859353,-p@chr4:71859342..71859353
-
Mm9::chr4:86303273..86303291,-p@chr4:86303273..86303291
-
Mm9::chr5:120969718..120969761,+p@chr5:120969718..120969761
+
Mm9::chr5:123689685..123689727,+p@chr5:123689685..123689727
+
Mm9::chr5:136173121..136173124,+p@chr5:136173121..136173124
+
Mm9::chr5:136204526..136204537,+p@chr5:136204526..136204537
+
Mm9::chr5:136209734..136209749,+p@chr5:136209734..136209749
+
Mm9::chr5:136210826..136210846,+p@chr5:136210826..136210846
+
Mm9::chr5:140593994..140594010,-p@chr5:140593994..140594010
-
Mm9::chr5:140594014..140594023,-p@chr5:140594014..140594023
-
Mm9::chr5:20392008..20392016,+p@chr5:20392008..20392016
+
Mm9::chr5:35387912..35387920,+p@chr5:35387912..35387920
+
Mm9::chr5:35387924..35387934,+p@chr5:35387924..35387934
+
Mm9::chr5:51431337..51431344,+p@chr5:51431337..51431344
+
Mm9::chr6:116600743..116600747,+p5@8430408G22Rik
Mm9::chr6:116601797..116601814,+p@chr6:116601797..116601814
+
Mm9::chr6:116601894..116601903,+p@chr6:116601894..116601903
+
Mm9::chr6:116602248..116602281,+p@chr6:116602248..116602281
+
Mm9::chr6:125540878..125540886,+p@chr6:125540878..125540886
+
Mm9::chr6:136895564..136895569,-p@chr6:136895564..136895569
-
Mm9::chr6:72092166..72092185,+p@chr6:72092166..72092185
+
Mm9::chr6:72306098..72306121,+p@chr6:72306098..72306121
+
Mm9::chr6:72307947..72307960,+p@chr6:72307947..72307960
+
Mm9::chr6:87794011..87794082,-p@chr6:87794011..87794082
-
Mm9::chr7:13615857..13615886,+p4@Trim28
Mm9::chr7:149839571..149839592,-p@chr7:149839571..149839592
-
Mm9::chr7:20263296..20263301,-p4@Apoc2
Mm9::chr7:26030459..26030472,-p@chr7:26030459..26030472
-
Mm9::chr7:36376782..36376790,+p@chr7:36376782..36376790
+
Mm9::chr8:10435789..10435799,+p@chr8:10435789..10435799
+
Mm9::chr8:10865930..10865936,-p@chr8:10865930..10865936
-
Mm9::chr8:10899947..10899956,+p2@uc009kuw.1
p2@uc009kux.1
Mm9::chr8:10902046..10902061,+p@chr8:10902046..10902061
+
Mm9::chr8:112521472..112521476,+p@chr8:112521472..112521476
+
Mm9::chr8:112522903..112522925,+p@chr8:112522903..112522925
+
Mm9::chr8:112523147..112523161,+p@chr8:112523147..112523161
+
Mm9::chr8:127087771..127087805,-p@chr8:127087771..127087805
-
Mm9::chr8:46362390..46362394,-p@chr8:46362390..46362394
-
Mm9::chr8:47604575..47604586,+p@chr8:47604575..47604586
+
Mm9::chr8:47612553..47612599,+p7@Acsl1
Mm9::chr8:47619928..47619954,+p@chr8:47619928..47619954
+
Mm9::chr8:47620318..47620356,+p@chr8:47620318..47620356
+
Mm9::chr8:47620556..47620576,+p@chr8:47620556..47620576
+
Mm9::chr9:103130275..103130312,-p@chr9:103130275..103130312
-
Mm9::chr9:105322776..105322787,-p@chr9:105322776..105322787
-
Mm9::chr9:110246667..110246684,+p9@Scap
Mm9::chr9:110246689..110246708,+p7@Scap
Mm9::chr9:110246713..110246733,+p8@Scap
Mm9::chr9:110246755..110246766,+p15@Scap
Mm9::chr9:36587423..36587435,-p@chr9:36587423..36587435
-
Mm9::chr9:44208606..44208618,+p@chr9:44208606..44208618
+
Mm9::chr9:44210569..44210577,+p@chr9:44210569..44210577
+
Mm9::chr9:46078635..46078656,+p@chr9:46078635..46078656
+
Mm9::chrX:49782013..49782028,-p@chrX:49782013..49782028
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042579microbody0.00332900356243749
GO:0005777peroxisome0.00332900356243749
GO:0005743mitochondrial inner membrane0.00540090617780385
GO:0019866organelle inner membrane0.00540090617780385
GO:0031966mitochondrial membrane0.00540090617780385
GO:0005740mitochondrial envelope0.00649052408456709
GO:0006631fatty acid metabolic process0.00981808800090646
GO:0044429mitochondrial part0.0105147394166638
GO:0031090organelle membrane0.0115630803186878
GO:0031975envelope0.0155149459195771
GO:0031967organelle envelope0.0155149459195771
GO:0006629lipid metabolic process0.0155149459195771
GO:0032787monocarboxylic acid metabolic process0.0157069970756058
GO:0005739mitochondrion0.0258128411983208
GO:0019752carboxylic acid metabolic process0.0258128411983208
GO:0006082organic acid metabolic process0.0258128411983208
GO:0044255cellular lipid metabolic process0.0356763271790939
GO:0048250mitochondrial iron ion transport0.0356763271790939
GO:0009054electron acceptor activity0.0356763271790939
GO:0043758acetate-CoA ligase (ADP-forming) activity0.0356763271790939



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell5.14e-155
endopolyploid cell5.14e-155
parenchymal cell5.14e-155
polyploid cell5.14e-155
hepatocyte5.14e-155

Uber Anatomy
Ontology termp-valuen
liver2.01e-3822
epithelial sac2.01e-3822
digestive gland2.01e-3822
epithelium of foregut-midgut junction2.01e-3822
anatomical boundary2.01e-3822
hepatobiliary system2.01e-3822
foregut-midgut junction2.01e-3822
hepatic diverticulum2.01e-3822
liver primordium2.01e-3822
septum transversum2.01e-3822
liver bud2.01e-3822
digestive tract diverticulum1.17e-3623
sac1.17e-3623
exocrine gland1.48e-3325
exocrine system1.48e-3325
abdomen element4.15e-2149
abdominal segment element4.15e-2149
abdominal segment of trunk4.15e-2149
abdomen4.15e-2149
trunk mesenchyme2.33e-2045
epithelial tube8.27e-1747
mesenchyme1.85e-1661
entire embryonic mesenchyme1.85e-1661
subdivision of trunk5.09e-1566
endocrine gland1.15e-1460
gut epithelium4.96e-1455
gland2.39e-1365
trunk region element4.02e-1279
endocrine system8.25e-1272
unilaminar epithelium2.64e-1166
endo-epithelium1.03e-1069
foregut2.31e-1080
trunk2.55e-1090
immaterial anatomical entity4.67e-0979


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:62&oldid=2561282"