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|gostat_on_MCL_coexpression=
 
|gostat_on_MCL_coexpression=
 +
|ontology_enrichment_celltype=CL:0000181!4.37e-11!5;CL:0000417!4.37e-11!5;CL:0000668!4.37e-11!5;CL:0000412!4.37e-11!5;CL:0000182!4.37e-11!5
 +
|ontology_enrichment_disease=
 +
|ontology_enrichment_uberon=UBERON:0002107!5.30e-40!22;UBERON:0007499!5.30e-40!22;UBERON:0006925!5.30e-40!22;UBERON:0009497!5.30e-40!22;UBERON:0000015!5.30e-40!22;UBERON:0002423!5.30e-40!22;UBERON:0006235!5.30e-40!22;UBERON:0008835!5.30e-40!22;UBERON:0003894!5.30e-40!22;UBERON:0004161!5.30e-40!22;UBERON:0008836!5.30e-40!22;UBERON:0009854!4.16e-38!23;UBERON:0009856!4.16e-38!23;UBERON:0002365!8.99e-35!25;UBERON:0002330!8.99e-35!25;UBERON:0005172!2.37e-22!49;UBERON:0005173!2.37e-22!49;UBERON:0002417!2.37e-22!49;UBERON:0000916!2.37e-22!49;UBERON:0005256!2.91e-22!45;UBERON:0003914!6.40e-19!47;UBERON:0003104!3.86e-17!61;UBERON:0009142!3.86e-17!61;UBERON:0002368!1.06e-15!60;UBERON:0009569!1.59e-15!66;UBERON:0002530!3.48e-14!65;UBERON:0003929!7.81e-14!55;UBERON:0000949!2.03e-12!72;UBERON:0005177!2.76e-12!79;UBERON:0000490!6.31e-11!66;UBERON:0001041!8.21e-11!80;UBERON:0005911!2.70e-10!69;UBERON:0002100!2.82e-10!90;UBERON:0000466!1.06e-09!79;UBERON:0004921!2.71e-07!114;UBERON:0001007!4.26e-07!116;UBERON:0001555!4.26e-07!116;UBERON:0007026!4.26e-07!116;UBERON:0004119!6.60e-07!118;UBERON:0000925!6.60e-07!118;UBERON:0006595!6.60e-07!118
 
}}
 
}}

Revision as of 12:00, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127331024..127331040,+p@chr10:127331024..127331040
+
Mm9::chr2:4857080..4857097,-p@chr2:4857080..4857097
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Mm9::chr5:123626106..123626143,+p@chr5:123626106..123626143
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Mm9::chr5:135608332..135608337,-p@chr5:135608332..135608337
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Mm9::chr7:147955119..147955134,-p@chr7:147955119..147955134
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Mm9::chr7:147956077..147956095,-p@chr7:147956077..147956095
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Mm9::chr7:147956118..147956132,-p@chr7:147956118..147956132
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Mm9::chr7:147959053..147959108,-p@chr7:147959053..147959108
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Mm9::chr7:20274903..20274921,+p@chr7:20274903..20274921
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Mm9::chr7:20274932..20274953,+p@chr7:20274932..20274953
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Mm9::chr9:107558265..107558276,+p@chr9:107558265..107558276
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
metabolising cell4.37e-115
endopolyploid cell4.37e-115
parenchymal cell4.37e-115
polyploid cell4.37e-115
hepatocyte4.37e-115

Uber Anatomy
Ontology termp-valuen
liver5.30e-4022
epithelial sac5.30e-4022
digestive gland5.30e-4022
epithelium of foregut-midgut junction5.30e-4022
anatomical boundary5.30e-4022
hepatobiliary system5.30e-4022
foregut-midgut junction5.30e-4022
hepatic diverticulum5.30e-4022
liver primordium5.30e-4022
septum transversum5.30e-4022
liver bud5.30e-4022
digestive tract diverticulum4.16e-3823
sac4.16e-3823
exocrine gland8.99e-3525
exocrine system8.99e-3525
abdomen element2.37e-2249
abdominal segment element2.37e-2249
abdominal segment of trunk2.37e-2249
abdomen2.37e-2249
trunk mesenchyme2.91e-2245
epithelial tube6.40e-1947
mesenchyme3.86e-1761
entire embryonic mesenchyme3.86e-1761
endocrine gland1.06e-1560
subdivision of trunk1.59e-1566
gland3.48e-1465
gut epithelium7.81e-1455
endocrine system2.03e-1272
trunk region element2.76e-1279
unilaminar epithelium6.31e-1166
foregut8.21e-1180
endo-epithelium2.70e-1069
trunk2.82e-1090
immaterial anatomical entity1.06e-0979
subdivision of digestive tract2.71e-07114
digestive system4.26e-07116
digestive tract4.26e-07116
primitive gut4.26e-07116
endoderm-derived structure6.60e-07118
endoderm6.60e-07118
presumptive endoderm6.60e-07118


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}