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|ontology_enrichment_disease=
 
|ontology_enrichment_disease=
 
|ontology_enrichment_uberon=UBERON:0002107!4.20e-40!22;UBERON:0007499!4.20e-40!22;UBERON:0006925!4.20e-40!22;UBERON:0009497!4.20e-40!22;UBERON:0000015!4.20e-40!22;UBERON:0002423!4.20e-40!22;UBERON:0006235!4.20e-40!22;UBERON:0008835!4.20e-40!22;UBERON:0003894!4.20e-40!22;UBERON:0004161!4.20e-40!22;UBERON:0008836!4.20e-40!22;UBERON:0009854!2.59e-38!23;UBERON:0009856!2.59e-38!23;UBERON:0002365!3.67e-35!25;UBERON:0002330!3.67e-35!25;UBERON:0005256!5.14e-19!45;UBERON:0003914!3.74e-18!47;UBERON:0005172!2.32e-17!49;UBERON:0005173!2.32e-17!49;UBERON:0002417!2.32e-17!49;UBERON:0000916!2.32e-17!49;UBERON:0003929!2.50e-15!55;UBERON:0002368!6.09e-14!60;UBERON:0003104!1.08e-13!61;UBERON:0009142!1.08e-13!61;UBERON:0002530!9.10e-13!65;UBERON:0000490!1.49e-12!66;UBERON:0009569!1.49e-12!66;UBERON:0005911!5.99e-12!69;UBERON:0000949!2.15e-11!72;UBERON:0000466!2.91e-10!79;UBERON:0005177!2.91e-10!79;UBERON:0001041!4.07e-10!80;UBERON:0002100!7.80e-09!90
 
|ontology_enrichment_uberon=UBERON:0002107!4.20e-40!22;UBERON:0007499!4.20e-40!22;UBERON:0006925!4.20e-40!22;UBERON:0009497!4.20e-40!22;UBERON:0000015!4.20e-40!22;UBERON:0002423!4.20e-40!22;UBERON:0006235!4.20e-40!22;UBERON:0008835!4.20e-40!22;UBERON:0003894!4.20e-40!22;UBERON:0004161!4.20e-40!22;UBERON:0008836!4.20e-40!22;UBERON:0009854!2.59e-38!23;UBERON:0009856!2.59e-38!23;UBERON:0002365!3.67e-35!25;UBERON:0002330!3.67e-35!25;UBERON:0005256!5.14e-19!45;UBERON:0003914!3.74e-18!47;UBERON:0005172!2.32e-17!49;UBERON:0005173!2.32e-17!49;UBERON:0002417!2.32e-17!49;UBERON:0000916!2.32e-17!49;UBERON:0003929!2.50e-15!55;UBERON:0002368!6.09e-14!60;UBERON:0003104!1.08e-13!61;UBERON:0009142!1.08e-13!61;UBERON:0002530!9.10e-13!65;UBERON:0000490!1.49e-12!66;UBERON:0009569!1.49e-12!66;UBERON:0005911!5.99e-12!69;UBERON:0000949!2.15e-11!72;UBERON:0000466!2.91e-10!79;UBERON:0005177!2.91e-10!79;UBERON:0001041!4.07e-10!80;UBERON:0002100!7.80e-09!90
 +
|tfbs_overrepresentation_for_novel_motifs=0.354643,0.0909519,0.330161,0.394491,0.645379,0.40827,0.495658,0.880357,0.468136,0.0330111,0.453212,0.484001,0.146657,0.507558,1.26184,0,0.696644,0.22065,1.94334,0.528436,0.296085,1.09871,0.50668,0.64218,1.60644,0.534339,0.128175,0.428336,0.739731,0.656973,0.414842,0.796599,0.218674,0.364174,0.242923,0.482999,0.210533,0.480503,0.559915,0.167387,0.224094,0.419787,1.03041,1.2686,0.0122159,0.383899,0.618203,0.443479,0.904531,0.271021,0.679429,0.560572,1.05886,0.937018,0.954342,0.514504,0.279148,0.471658,0.384731,0.512521,0.776777,0.569793,0.952934,0.668331,0.525334,0.708248,1.08987,1.43807,0.772155,1.29123,0.31262,0.151245,0.0512949,0.987652,0.116281,0.107966,0.113315,0.607043,0.759798,1.47357,0.152219,0.713779,0.568383,0.14134,0.873141,0.0176817,0.439624,0.0965007,0.623015,1.60001,1.15927,0.878077,0.809272,0.657661,0.188213,0.17334,0.14449,0.812053,0.618454,0.987389,0.605162,0.796322,0.919715,0.680015,0.678976,0.419366,0.737915,1.95923,0.30446,0.297733,0.919252,0.921485,0.301014,0.458194,1.16629,0.222515,0.0259088,0.398075,0.697928,1.12703,0.993019,0.647706,0.536114,1.47408,1.22022,0.763454,0.503569,0.802564,1.08836,0.663857,0.90286,0.387557,1.05894,0.527782,1.18781,0.0467191,0.362565,0.421136,1.13883,1.96797,1.5682,1.09456,0.547855,0.806961,0.672593,0.420221,0.621266,1.92834,3.52147,1.2115,0.32395,0.041769,0.938577,0.178329,0.526881,1.01974,0.561556,1.30227,0.352329,0.362302,1.1483,0.872292,1.80231,0.345891,0.669337,0.519673,0.209556,0.482466,0.00844742
 
}}
 
}}

Revision as of 09:57, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:85740708..85740718,-p@chr12:85740708..85740718
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Mm9::chr15:82472581..82472598,+p@chr15:82472581..82472598
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Mm9::chr16:65665322..65665349,+p@chr16:65665322..65665349
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Mm9::chr19:32617814..32617825,+p@chr19:32617814..32617825
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Mm9::chr19:32617918..32617940,+p@chr19:32617918..32617940
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Mm9::chr19:32617950..32617962,+p@chr19:32617950..32617962
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Mm9::chr2:27451879..27451901,-p@chr2:27451879..27451901
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Mm9::chr4:49493989..49494000,-p5@uc008svs.1
Mm9::chr7:147945724..147945727,-p@chr7:147945724..147945727
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
metabolising cell9.03e-215
endopolyploid cell9.03e-215
parenchymal cell9.03e-215
polyploid cell9.03e-215
hepatocyte9.03e-215
fibroblast2.05e-071
hepatic stellate cell2.05e-071

Uber Anatomy
Ontology termp-valuen
liver4.20e-4022
epithelial sac4.20e-4022
digestive gland4.20e-4022
epithelium of foregut-midgut junction4.20e-4022
anatomical boundary4.20e-4022
hepatobiliary system4.20e-4022
foregut-midgut junction4.20e-4022
hepatic diverticulum4.20e-4022
liver primordium4.20e-4022
septum transversum4.20e-4022
liver bud4.20e-4022
digestive tract diverticulum2.59e-3823
sac2.59e-3823
exocrine gland3.67e-3525
exocrine system3.67e-3525
trunk mesenchyme5.14e-1945
epithelial tube3.74e-1847
abdomen element2.32e-1749
abdominal segment element2.32e-1749
abdominal segment of trunk2.32e-1749
abdomen2.32e-1749
gut epithelium2.50e-1555
endocrine gland6.09e-1460
mesenchyme1.08e-1361
entire embryonic mesenchyme1.08e-1361
gland9.10e-1365
unilaminar epithelium1.49e-1266
subdivision of trunk1.49e-1266
endo-epithelium5.99e-1269
endocrine system2.15e-1172
immaterial anatomical entity2.91e-1079
trunk region element2.91e-1079
foregut4.07e-1080
trunk7.80e-0990


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}