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Difference between revisions of "MCL coexpression mm9:99"

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{{MCL_coexpression_mm9
 
{{MCL_coexpression_mm9
 
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 +
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0105432721448998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000803627390852965,0,0.0959160283535204,0,1.46057951422652,0.187437010020026,0.189429324006757,0.160776625956154,0.073044764312109,0,0,0,0,0,0,0,0,0,0,0.161238760633416,0,0,0,0,0,0,0,0,0.0959343498639139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0601594600041512,0,0,0,0,0,0,0,0.0652566657696677,0,0,0,0,0.0238893858211046,0,0.12766898869468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0781650849416855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00229083346727232,0,0,0
 
|gostat_on_MCL_coexpression=GO:0006953;acute-phase response;0.019018767241927;20208,18405,20209!
 
|gostat_on_MCL_coexpression=GO:0006953;acute-phase response;0.019018767241927;20208,18405,20209!
 
}}
 
}}

Revision as of 03:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126957832..126957840,-p@chr10:126957832..126957840
-
Mm9::chr10:68567689..68567694,+p@chr10:68567689..68567694
+
Mm9::chr10:68682076..68682094,+p7@Rhobtb1
Mm9::chr10:68682195..68682203,+p19@Rhobtb1
Mm9::chr10:7500063..7500075,+p1@ENSMUST00000147230
p1@uc007eim.1
Mm9::chr10:93536784..93536789,+p@chr10:93536784..93536789
+
Mm9::chr11:115885278..115885291,-p4@Gm12657
p4@Gm6421
p4@Gm6749
p4@Gm7194
p4@Gm7227
p4@H3f3a
p4@H3f3b
p4@H3f3c
Mm9::chr11:60749121..60749133,+p@chr11:60749121..60749133
+
Mm9::chr11:69870356..69870397,+p@chr11:69870356..69870397
+
Mm9::chr11:8449222..8449247,-p@chr11:8449222..8449247
-
Mm9::chr12:105392056..105392101,-p1@Serpina3c
Mm9::chr13:113126137..113126150,+p@chr13:113126137..113126150
+
Mm9::chr13:34720187..34720194,-p@chr13:34720187..34720194
-
Mm9::chr13:53076382..53076393,-p2@Nfil3
Mm9::chr13:53076396..53076452,-p1@Nfil3
Mm9::chr13:75844995..75845009,+p3@Ell2
Mm9::chr14:45938205..45938221,-p1@Ero1l
Mm9::chr14:60059409..60059419,+p9@Cab39l
Mm9::chr14:70731115..70731135,-p14@Slc39a14
Mm9::chr14:70731248..70731254,-p13@Slc39a14
Mm9::chr14:70731265..70731284,-p7@Slc39a14
Mm9::chr14:70731296..70731315,-p8@Slc39a14
Mm9::chr14:70731321..70731330,-p9@Slc39a14
Mm9::chr15:75771423..75771445,+p2@Zfp623
Mm9::chr15:84753870..84753881,+p2@Nup50
Mm9::chr16:11365866..11365871,-p@chr16:11365866..11365871
-
Mm9::chr16:37868270..37868289,+p3@Lrrc58
Mm9::chr16:78266194..78266225,-p@chr16:78266194..78266225
-
Mm9::chr16:78302020..78302049,+p3@Cxadr
Mm9::chr16:90738467..90738483,+p7@Mrap
Mm9::chr16:92399058..92399087,-p@chr16:92399058..92399087
-
Mm9::chr16:95923706..95923717,+p6@Ets2
Mm9::chr17:23813627..23813651,-p@chr17:23813627..23813651
-
Mm9::chr17:26643089..26643111,-p@chr17:26643089..26643111
-
Mm9::chr17:26643117..26643133,-p@chr17:26643117..26643133
-
Mm9::chr17:26643323..26643340,-p@chr17:26643323..26643340
-
Mm9::chr17:26644573..26644604,-p2@Dusp1
Mm9::chr17:71096223..71096230,-p@chr17:71096223..71096230
-
Mm9::chr17:71351737..71351744,-p5@Myl12a
Mm9::chr17:71351828..71351932,-p3@Myl12a
Mm9::chr18:46901166..46901178,-p@chr18:46901166..46901178
-
Mm9::chr18:9485342..9485347,-p@chr18:9485342..9485347
-
Mm9::chr19:27410018..27410024,+p@chr19:27410018..27410024
+
Mm9::chr19:39421834..39421838,+p@chr19:39421834..39421838
+
Mm9::chr19:39585310..39585313,+p2@Cyp2c39
Mm9::chr19:39585334..39585345,+p1@Cyp2c39
Mm9::chr19:39585367..39585380,+p@chr19:39585367..39585380
+
Mm9::chr19:40265512..40265522,+p@chr19:40265512..40265522
+
Mm9::chr19:4059449..4059476,-p1@BC021614
Mm9::chr1:123224228..123224234,-p14@Insig2
Mm9::chr1:169173738..169173747,-p@chr1:169173738..169173747
-
Mm9::chr1:174095654..174095663,+p@chr1:174095654..174095663
+
Mm9::chr1:191684254..191684265,+p@chr1:191684254..191684265
+
Mm9::chr1:31006601..31006602,-p1@LOC100044742
p1@Ptp4a1
Mm9::chr1:31006722..31006725,-p14@LOC100044742
p14@Ptp4a1
Mm9::chr1:31006749..31006771,-p6@LOC100044742
p6@Ptp4a1
Mm9::chr1:31006862..31006883,-p7@LOC100044742
p7@Ptp4a1
Mm9::chr1:90456476..90456498,+p@chr1:90456476..90456498
+
Mm9::chr1:9535570..9535576,+p2@Rrs1
Mm9::chr2:104426232..104426235,+p@chr2:104426232..104426235
+
Mm9::chr2:152656146..152656153,-p7@Bcl2l1
Mm9::chr2:157392436..157392459,-p7@Blcap
Mm9::chr2:157943224..157943227,-p@chr2:157943224..157943227
-
Mm9::chr2:157943524..157943545,-p@chr2:157943524..157943545
-
Mm9::chr2:157944615..157944622,-p@chr2:157944615..157944622
-
Mm9::chr2:157944705..157944714,-p@chr2:157944705..157944714
-
Mm9::chr2:157945931..157945947,-p@chr2:157945931..157945947
-
Mm9::chr2:157953040..157953046,-p@chr2:157953040..157953046
-
Mm9::chr2:157972093..157972109,-p1@Tgm2
Mm9::chr2:164256745..164256756,-p@chr2:164256745..164256756
-
Mm9::chr2:164256761..164256773,-p@chr2:164256761..164256773
-
Mm9::chr2:19579682..19579699,+p2@Otud1
Mm9::chr2:30818619..30818669,+p@chr2:30818619..30818669
+
Mm9::chr2:32306888..32306899,-p6@Slc25a25
Mm9::chr2:32306916..32306990,-p1@Slc25a25
Mm9::chr2:32308704..32308710,-p@chr2:32308704..32308710
-
Mm9::chr2:35834246..35834262,+p@chr2:35834246..35834262
+
Mm9::chr2:3687911..3687936,+p@chr2:3687911..3687936
+
Mm9::chr2:3687945..3687954,+p@chr2:3687945..3687954
+
Mm9::chr3:107820349..107820359,-p@chr3:107820349..107820359
-
Mm9::chr3:145311674..145311692,-p@chr3:145311674..145311692
-
Mm9::chr3:153592594..153592603,-p@chr3:153592594..153592603
-
Mm9::chr3:79371669..79371686,-p4@Fnip2
Mm9::chr3:84445404..84445408,-p@chr3:84445404..84445408
-
Mm9::chr4:150122456..150122462,+p@chr4:150122456..150122462
+
Mm9::chr4:150229039..150229050,-p1@1700045H11Rik
Mm9::chr4:150240961..150240984,-p@chr4:150240961..150240984
-
Mm9::chr4:150241198..150241210,+p@chr4:150241198..150241210
+
Mm9::chr4:44085888..44085893,-p9@Gne
Mm9::chr4:45421750..45421779,-p2@Mcart1
Mm9::chr4:45495635..45495649,-p16@Shb
Mm9::chr4:63005684..63005691,+p@chr4:63005684..63005691
+
Mm9::chr5:116896716..116896749,-p2@Srrm4
Mm9::chr5:125870471..125870484,-p7@Ubc
Mm9::chr5:139960345..139960362,-p2@Zfand2a
Mm9::chr5:144166919..144166937,-p@chr5:144166919..144166937
-
Mm9::chr5:24606870..24606882,-p25@Prkag2
Mm9::chr6:108610513..108610528,+p3@Bhlhe40
Mm9::chr6:108615910..108615920,+p@chr6:108615910..108615920
+
Mm9::chr6:133055217..133055226,+p2@2700089E24Rik
p2@LOC100504757
Mm9::chr6:134381878..134381885,+p@chr6:134381878..134381885
+
Mm9::chr6:34663162..34663174,-p@chr6:34663162..34663174
-
Mm9::chr6:37489714..37489726,+p3@Akr1d1
Mm9::chr6:66987201..66987214,-p3@Gadd45a
Mm9::chr7:117927007..117927010,+p@chr7:117927007..117927010
+
Mm9::chr7:117928643..117928649,-p@chr7:117928643..117928649
-
Mm9::chr7:121912395..121912405,+p17@Insc
Mm9::chr7:53998349..53998350,-p1@Saa1
Mm9::chr7:54007202..54007205,+p1@Saa2
Mm9::chr7:56133428..56133464,-p@chr7:56133428..56133464
-
Mm9::chr7:56133492..56133522,-p@chr7:56133492..56133522
-
Mm9::chr8:120195160..120195171,-p6@Sdr42e1
Mm9::chr8:120195401..120195423,-p5@Sdr42e1
Mm9::chr8:120195426..120195455,-p3@Sdr42e1
Mm9::chr8:121965297..121965318,+p@chr8:121965297..121965318
+
Mm9::chr8:129115814..129115826,-p@chr8:129115814..129115826
-
Mm9::chr8:13037372..13037390,+p2@F10
Mm9::chr8:28370867..28370890,+p2@Eif4ebp1
Mm9::chr8:28370901..28370934,+p@chr8:28370901..28370934
+
Mm9::chr8:28371895..28371905,+p@chr8:28371895..28371905
+
Mm9::chr8:73155530..73155539,-p1@Gdf15
Mm9::chr8:73156318..73156360,-p2@Gdf15
Mm9::chr8:93908591..93908609,+p@chr8:93908591..93908609
+
Mm9::chr8:96703705..96703761,+p@chr8:96703705..96703761
+
Mm9::chr8:96718705..96718711,-p@chr8:96718705..96718711
-
Mm9::chr9:106149758..106149790,-p4@Alas1
Mm9::chr9:34926720..34926729,-p@chr9:34926720..34926729
-
Mm9::chr9:66368117..66368149,-p15@Usp3
Mm9::chr9:72538851..72538854,-p@chr9:72538851..72538854
-
Mm9::chr9:75257089..75257143,-p2@Mapk6
Mm9::chr9:92144587..92144591,+p7@Plscr1
Mm9::chrX:33868415..33868436,+p2@Lonrf3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0006953acute-phase response0.019018767241927



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}