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MacroAPE 1083:ACGTCACAA,motif25: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;371.83;142.234;207.214;0.722!2;58.482;528.504;80.142;54.872!3;165.338;59.204;496.736;0.722!4;23.104;71.478;0.722;626.696!5;89.528;595.65;0.7...")
 
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-128I7;0.0244102!12177-128I8;0.0511574!12182-129A4;0.0540624!12183-129A5;0.0538807!12184-129A6;0.044093!10809-111A8;0.0182933!10597-108E3;0.801229!10717-109I6;0.4145!10455-106G5;0.735729!10534-107G3;0.806516!10429-106D6;0.82545!10464-106H5;0.307981!10827-111C8;0.787388!10789-110H6;0.761315!10828-111C9;0.534317!10788-110H5;0.800141!10792-110H9;0.821993!10765-110E9;0.853497!10829-111D1;0.853721!10830-111D2;0.870554!10831-111D3;0.562299!10832-111D4;0.89977!10833-111D5;0.936225!10764-110E8;0.84983!10770-110F5;0.308037!10399-106A3;0.886402!10400-106A4;0.799457!10405-106A9;0.756218!10834-111D6;0.400792!10835-111D7;0.965352!10836-111D8;0.411834!10837-111D9;0.914858!10699-109G6;0.616667!10802-111A1;0.990779!10796-110I4;0.788571!10010-101C1;0.348723!10810-111A9;0.302476!10421-106C7;0.586664!10708-109H6;0.282385!12235-129G3;0.926779!12236-129G4;0.759868!12237-129G5;0.095012!10167-103B5;0.348507!10151-102I7;0.897624!10428-106D5;0.328359!10795-110I3;0.419949!10805-111A4;0.232128!10052-101G7;0.242323!10189-103D9;0.228963!10589-108D4;0.0818715!10425-106D2;0.939728!10427-106D4;0.0239402!10702-109G9;0.416966!10432-106D9;0.190987!10496-107C1;0.651439!10718-109I7;0.190431!10011-101C2;0.447094!10053-101G8;0.231763!10686-109F2;0.0014946!10084-102B3;0.0797163!10012-101C3;0.739116!10085-102B4;0.684891!10482-107A5;0.936672!10419-106C5;0.778389!10080-102A8;0.714708!10760-110E4;0.637546!10709-109H7;0.545952!10710-109H8;0.655174!10703-109H1;0.843176!10719-109I8;0.730485!10642-109A3;0.766477!10177-103C6;0.676479!10164-103B2;0.582427!10173-103C2;0.381743!10166-103B4;0.765242!10083-102B2;0.366781!10188-103D8;0.597442!10552-107I3;0.838084!10553-107I4;0.526571!10013-101C4;0.629983!10536-107G5;0.043144!10618-108G6;0.647044!10423-106C9;0.614759!10785-110H2;0.587711!12238-129G6;0.806277!12239-129G7;0.851701!12240-129G8;0.0994189!10416-106C2;0.782164!10801-110I9;0.852289!10766-110F1;0.549697!10824-111C5;0.917754!10825-111C6;0.779251!10826-111C7;0.767348!10454-106G4;0.742737!10409-106B4;0.806758!10638-108I8;0.644214!10636-108I6;0.900484!10513-107D9;0.348026!10420-106C6;0.727708!10082-102B1;0.855473!10014-101C5;0.081273!10070-101I7;0.0390191!10452-106G2;0.0825319!10453-106G3;0.450147!10449-106F8;0.821868!10042-101F6;0.989959!10069-101I6;0.739461!10193-103E4;0.388477!10631-108I1;0.759907!10438-106E6;0.836177!10488-107B2;0.934445!10196-103E7;0.52204!10071-101I8;0.267154!10071-101I8;0.227504!10041-101F5;0.445739!10451-106G1;0.099302!10450-106F9;0.950203!10604-108F1;0.654563!10605-108F2;0.549507!10606-108F3;0.34557!10603-108E9;0.233504!10497-107C2;0.677731!10448-106F7;0.437788!10643-109A4;0.150677!10426-106D3;0.706365!10431-106D8;0.823622!10197-103E8;0.987984!10443-106F2;0.370726!10815-111B5;0.0850885!10816-111B6;0.780949!10817-111B7;0.931469!10015-101C6;0.867301!10410-106B5;0.0719066!10054-101G9;0.494942!10758-110E2;0.137634!10711-109H9;0.349929!10040-101F4;0.908462!10470-106I2;0.616826!10415-106C1;0.741014!10198-103E9;0.440881!10614-108G2;0.286474!10612-108F9;0.917656!10549-107H9;0.473962!10615-108G3;0.602836!10487-107B1;0.284727!10433-106E1;0.000326898!10688-109F4;0.953466!10444-106F3;0.981224!10444-106F3;0.261715!10485-107A8;0.283927!10413-106B8;0.462683!10175-103C4;0.311145!10161-103A8;0.663228!12131-128D7;0.287695!10624-108H3;0.0895!10712-109I1;0.41266!10205-103F7;0.205091!10206-103F8;0.351798!10207-103F9;0.27758!10050-101G5;0.716017!10051-101G6;0.267262!10016-101C7;0.426564!10046-101G1;0.501953!10778-110G4;0.0987842!10633-108I3;0.304224!10818-111B8;0.698066!10819-111B9;0.757181!10820-111C1;0.769723!10484-107A7;0.724086!10808-111A7;0.357368!10169-103B7;0.903682!10153-102I9;0.766973!13425-144D5;0.236299!13433-144E4;0.916317!13437-144E8;0.914388!11904-125F5;0.864852!11905-125F6;0.0574351!10039-101F3;0.00751418!10791-110H8;0.668832!10017-101C8;0.680679!10045-101F9;0.428249!10509-107D5;0.46818!10839-111E2;0.367573!10692-109F8;0.550232!10079-102A7;0.548208!10078-102A6;0.107513!10721-110A1;0.447118!10569-108B2;0.363186!10570-108B3;0.202218!10571-108B4;0.346701!10647-109A8;0.149028!10752-110D5;0.119383!10782-110G8;0.159641!10726-110A6;0.0309802!10018-101C9;0.621321!10086-102B5;0.876675!10182-103D2;0.842827!10165-103B3;0.782012!10499-107C4;0.378973!10408-106B3;0.642841!10019-101D1;0.473331!10068-101I5;0.505001!10075-102A3;0.342382!10077-102A5;0.454123!10727-110A7;0.816334!10775-110G1;0.737989!10412-106B7;0.997347!12231-129F8;0.378185!12232-129F9;0.237247!12233-129G1;0.417101!12234-129G2;0.250853!10414-106B9;0.0895891!10170-103B8;0.0750306!10183-103D3;0.982472!10150-102I6;0.808492!10174-103C3;0.439269!10155-103A2;0.642319!10038-101F2;0.275905!10838-111E1;0.394969!10759-110E3;0.760441!10514-107E1;0.701782!10465-106H6;0.0582344!10691-109F7;0.539379!10843-111E6;0.940625!10844-111E7;0.563753!11747-123G1;0.597504!11748-123G2;0.00528209!11749-123G3;0.033383!11750-123G4;0.0116042!11751-123G5;0.101746!11840-124H4;0.0604142!11752-123G6;0.348757!11753-123G7;0.893746!11754-123G8;0.21859!11755-123G9;0.20263!11756-123H1;0.256749!11833-124G6;0.0657688!11760-123H5;0.36899!11836-124G9;0.0183334!11758-123H3;0.201887!11835-124G8;0.0670951!11762-123H7;0.116631!11838-124H2;0.0317071!11757-123H2;0.131218!11759-123H4;0.00691157!11761-123H6;0.194547!11842-124H6;0.0453824!11837-124H1;0.287957!10568-108B1;0.0661849!13230-141I8;0.483359!13231-141I9;0.0108446!10696-109G3;0.0352404!10493-107B7;0.130967!10494-107B8;0.583719!10850-111F4;0.690315!10851-111F5;0.699524!10852-111F6;0.0336637!10853-111F7;0.108223!10854-111F8;0.718196!10855-111F9;0.0387811!10856-111G1;0.0558853!10847-111F1;0.0524556!10846-111E9;0.345761!10848-111F2;0.0665877!10845-111E8;0.336552!10857-111G2;0.662236!10858-111G3;0.611301!10156-103A3;0.644879!11901-125F2;0.43639!11902-125F3;0.927319!11903-125F4;0.451682!10689-109F5;0.725025!10648-109A9;0.913218!10784-110H1;0.465648!10744-110C6;0.291536!10772-110F7;0.202203!10474-106I6;0.816699!10600-108E6;0.817114!10684-109E9;0.337688!12226-129F3;0.953294!12227-129F4;0.640943!10508-107D4;0.544817!10539-107G8;0.932508!10607-108F4;0.517!10555-107I6;0.206394!10774-110F9;0.917126!10637-108I7;0.933881!10663-109C6;0.440634!10728-110A8;0.155021!10729-110A9;0.937924!10430-106D7;0.0556083!10730-110B1;0.742281!10813-111B3;0.466917!10812-111B2;0.0567484!10037-101F1;0.0226141!10172-103C1;0.681667!10163-103B1;0.73225!10076-102A4;0.317313!10073-102A1;0.980346!10036-101E9;0.540031!10195-103E6;0.952183!10277-104E7;0.432609!10434-106E2;0.875989!10550-107I1;0.662014!10545-107H5;0.625843!10544-107H4;0.400376!10704-109H2;0.869906!10510-107D6;0.255808!10558-107I9;0.988707!10020-101D2;0.270657!10732-110B3;0.171617!10049-101G4;0.0509039!10698-109G5;0.560686!10437-106E5;0.51253!10417-106C3;0.437714!10035-101E8;0.137392!10171-103B9;0.833428!10157-103A4;0.795601!10034-101E7;0.49703!10072-101I9;0.854711!10199-103F1;0.320837!10200-103F2;0.279389!10697-109G4;0.116524!10723-110A3;0.137564!10179-103C8;0.291427!10160-103A7;0.225057!10180-103C9;0.936344!10162-103A9;0.601095!10021-101D3;0.828869!10840-111E3;0.260968!10706-109H4;0.389011!10033-101E6;0.668709!10032-101E5;0.589283!10490-107B4;0.936318!10439-106E7;0.99344!10022-101D4;0.5279!10176-103C5;0.08443!10469-106I1;0.713675!10067-101I4;0.548208!10411-106B6;0.0075232!10471-106I3;0.0528776!10030-101E3;0.955819!10475-106I7;0.41011!10787-110H4;0.906055!10477-106I9;0.792932!10695-109G2;0.272517!11771-123I7;0.0486794!11772-123I8;0.541044!11773-123I9;0.550853!10093-102C3;0.836391!10442-106F1;0.416336!10442-106F1;0.762286!10201-103F3;0.681797!10639-108I9;0.154915!11843-124H7;0.500959!11841-124H5;0.541767!10693-109F9;0.661004!10436-106E4;0.142399!10483-107A6;0.0874004!10282-104F3;0.0723428!10023-101D5;0.460891!10066-101I3;0.643428!10065-101I2;0.17235!10800-110I8;0.048674!10610-108F7;0.0610137!10841-111E4;0.253643!10541-107H1;0.881917!10842-111E5;0.277412!10562-108A4;0.746778!10024-101D6;0.350598!10064-101I1;0.138919!10609-108F6;0.0348699!10048-101G3;0.0481886!10781-110G7;0.101395!10181-103D1;0.0353389!10159-103A6;0.433458!10056-101H2;0.19087!10737-110B8;0.0426064!10025-101D7;0.114205!10044-101F8;0.683914!10424-106D1;0.6969!10463-106H4;0.801093!10616-108G4;0.490844!10486-107A9;0.923638!10062-101H8;0.0677635!10202-103F4;0.0731747!10158-103A5;0.141732!10441-106E9;0.411619!10031-101E4;0.92105!10063-101H9;0.991983!10063-101H9;0.998761!11763-123H8;0.0513036!11765-123I1;0.0769969!11768-123I4;0.223612!10807-111A6;0.0627227!10790-110H7;0.42953!10798-110I6;0.755037!10786-110H3;0.553585!10591-108D6;0.377429!10593-108D8;0.311189!10590-108D5;0.693197!10026-101D8;0.580726!10096-102C6;1.14389e-08!10168-103B6;7.9154e-22!10154-103A1;0.804868!10209-103G2;0.305267!10061-101H7;0.0545638!10027-101D9;0.0352691!10043-101F7;0.586217!10783-110G9;0.934141!10028-101E1;0.120591!10060-101H6;0.371899!10203-103F5;0.307423!10059-101H5;0.0992837!10047-101G2;0.184187!10029-101E2;0.153422!10058-101H4;0.157399!10418-106C4;0.0885638!10492-107B6;0.564563!10694-109G1;0.603921!10797-110I5;0.00163884!10057-101H3;0.106763!10100-102D1;0.0604829!10055-101H1;0.119074!10204-103F6;0.0060372!10191-103E2;0.256904!10563-108A5;0.208924
|name=ACGTCACAA,motif25,CNhs10632,T:722.0(14.44%),B:3997.1(5.56%),P:1e-117
|name=ACGTCACAA,motif25,CNhs10632,T:722.0(14.44%),B:3997.1(5.56%),P:1e-117
|tomtom_result=CREB1#MA0018.2;1;0.00241508;1.14958;0.998625;9;ACGTCACAA;GACGTCACCAGG;-!MET32#MA0334.1;-1;0.00380929;1.81322;0.998625;7;ACGTCACAA;CGCCACA;+!Sox2#MA0143.1;3;0.00563495;2.68224;0.998625;9;ACGTCACAA;TTTGCATAACAAAGG;-!bZIP910#MA0096.1;0;0.00585734;2.78809;0.998625;7;ACGTCACAA;ACGTCAT;-!MET31#MA0333.1;-1;0.00741668;3.53034;0.998625;8;ACGTCACAA;CGCCACACT;-!TGA1A#MA0129.1;1;0.00755166;3.59459;0.998625;6;ACGTCACAA;TACGTCA;+!CST6#MA0286.1;2;0.00850938;4.05047;0.998625;7;ACGTCACAA;TTACGTCAT;-!Pax2#MA0067.1;0;0.00859284;4.09019;0.998625;8;ACGTCACAA;GCGTGACT;-!exd#MA0222.1;-1;0.00944078;4.49381;0.998625;8;ACGTCACAA;TGTCAAAA;-!Pou5f1#MA0142.1;4;0.0110346;5.25249;1;9;ACGTCACAA;ATTTGCATAACAAAG;-!CREB1#MA0018.2;2;0.016192;7.70738;1;6;ACGTCACAA;TGACGTCA;-!NDT80#MA0343.1;4;0.0176203;8.38728;1;9;ACGTCACAA;TTTCCGGCCACAAAAACGCAA;+!YPR015C#MA0435.1;11;0.0179381;8.53851;1;9;ACGTCACAA;TGTAAGGATTTACGTCTTCA;-
}}
}}

Latest revision as of 14:24, 7 September 2012

Full Name: ACGTCACAA,motif25,CNhs10632,T:722.0(14.44%),B:3997.1(5.56%),P:1e-117

Motif matrix
POACGT
1371.83142.234207.2140.722
258.482528.50480.14254.872
3165.33859.204496.7360.722
423.10471.4780.722626.696
589.528595.650.72236.1
6547.99815.162111.9146.93
70.722636.8040.72283.752
8607.9240.72215.88497.47
9672.9040.72247.6520.722

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CREB1#MA0018.210.002415081.149580.9986259ACGTCACAAGACGTCACCAGG-
MET32#MA0334.1-10.003809291.813220.9986257ACGTCACAACGCCACA+
Sox2#MA0143.130.005634952.682240.9986259ACGTCACAATTTGCATAACAAAGG-
bZIP910#MA0096.100.005857342.788090.9986257ACGTCACAAACGTCAT-
MET31#MA0333.1-10.007416683.530340.9986258ACGTCACAACGCCACACT-
TGA1A#MA0129.110.007551663.594590.9986256ACGTCACAATACGTCA+
CST6#MA0286.120.008509384.050470.9986257ACGTCACAATTACGTCAT-
Pax2#MA0067.100.008592844.090190.9986258ACGTCACAAGCGTGACT-
exd#MA0222.1-10.009440784.493810.9986258ACGTCACAATGTCAAAA-
Pou5f1#MA0142.140.01103465.2524919ACGTCACAAATTTGCATAACAAAG-
CREB1#MA0018.220.0161927.7073816ACGTCACAATGACGTCA-
NDT80#MA0343.140.01762038.3872819ACGTCACAATTTCCGGCCACAAAAACGCAA+
YPR015C#MA0435.1110.01793818.5385119ACGTCACAATGTAAGGATTTACGTCTTCA-
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