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MacroAPE 1083:CNhs13099 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;54.1292617445698;37.99333197373956;212.11942448799863;109.46577873362796!2;122.8502460889004;74.90395415262682;51.67841478082961;164.2751819...")
 
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34-107G3;0.089941!10429-106D6;0.0615833!10464-106H5;0.0355856!10827-111C8;0.130879!10789-110H6;0.00572038!10828-111C9;0.164393!10788-110H5;0.0759896!10792-110H9;0.068401!10765-110E9;0.00856441!10829-111D1;0.000471102!10830-111D2;0.18353!10831-111D3;0.0833554!10832-111D4;0.303794!10833-111D5;0.00112199!10764-110E8;0.0226176!10770-110F5;0.0421013!10399-106A3;0.00515988!10400-106A4;0.260213!10405-106A9;0.192728!10834-111D6;0.130669!10835-111D7;0.0142552!10836-111D8;0.0207885!10837-111D9;0.00380712!10699-109G6;0.109669!10802-111A1;0.183583!10796-110I4;0.0212691!10010-101C1;0.578238!10810-111A9;0.327741!10421-106C7;0.945596!10708-109H6;0.0549912!12235-129G3;0.640347!12236-129G4;0.720748!12237-129G5;0.9314!10167-103B5;0.969836!10151-102I7;0.96284!10428-106D5;0.743183!10795-110I3;0.00999971!10805-111A4;0.148915!10052-101G7;0.168302!10189-103D9;0.474812!10589-108D4;0.921951!10425-106D2;0.0563475!10427-106D4;0.322338!10702-109G9;0.161126!10432-106D9;0.365235!10496-107C1;0.439648!10718-109I7;0.0539544!10011-101C2;0.00566269!10053-101G8;0.644659!10686-109F2;0.0177465!10084-102B3;0.0863136!10012-101C3;0.614308!10085-102B4;0.607912!10482-107A5;0.708118!10419-106C5;0.61489!10080-102A8;0.613943!10760-110E4;0.507666!10709-109H7;0.79639!10710-109H8;0.809284!10703-109H1;0.869751!10719-109I8;0.0875812!10642-109A3;0.755646!10177-103C6;0.13675!10164-103B2;0.521066!10173-103C2;0.371507!10166-103B4;0.678812!10083-102B2;0.528549!10188-103D8;0.669787!10552-107I3;0.823722!10553-107I4;0.525937!10013-101C4;0.865372!10536-107G5;0.392897!10618-108G6;0.0290799!10423-106C9;0.548527!10785-110H2;0.439752!12238-129G6;0.71609!12239-129G7;0.989185!12240-129G8;0.273934!10416-106C2;0.465629!10801-110I9;0.120608!10766-110F1;0.0742866!10824-111C5;0.000847831!10825-111C6;0.138558!10826-111C7;0.0883446!10454-106G4;0.149394!10409-106B4;0.201428!10638-108I8;0.00243339!10636-108I6;0.737266!10513-107D9;0.495927!10420-106C6;0.839301!10082-102B1;0.350038!10014-101C5;0.344039!10070-101I7;0.30005!10452-106G2;0.433812!10453-106G3;0.71262!10449-106F8;0.398925!10042-101F6;0.58166!10069-101I6;0.459816!10193-103E4;0.213217!10631-108I1;0.427312!10438-106E6;0.114849!10488-107B2;0.949536!10196-103E7;0.545107!10071-101I8;0.798405!10071-101I8;0.697806!10041-101F5;0.740807!10451-106G1;0.415017!10450-106F9;0.0972329!10604-108F1;0.468941!10605-108F2;0.522919!10606-108F3;0.151908!10603-108E9;0.475726!10497-107C2;0.863992!10448-106F7;0.983751!10643-109A4;0.17024!10426-106D3;0.954667!10431-106D8;0.832871!10197-103E8;0.224688!10443-106F2;0.861101!10815-111B5;0.464876!10816-111B6;0.541878!10817-111B7;0.618462!10015-101C6;0.439296!10410-106B5;0.641968!10054-101G9;0.984054!10758-110E2;0.666309!10711-109H9;0.647812!10040-101F4;0.466328!10470-106I2;0.7675!10415-106C1;0.964769!10198-103E9;0.0186166!10614-108G2;0.993!10612-108F9;0.547786!10549-107H9;0.417461!10615-108G3;0.734975!10487-107B1;0.0774135!10433-106E1;0.705404!10688-109F4;0.956116!10444-106F3;0.962228!10444-106F3;0.681763!10485-107A8;0.838933!10413-106B8;0.274106!10175-103C4;0.260296!10161-103A8;0.522283!12131-128D7;0.630535!10624-108H3;0.011935!10712-109I1;0.534805!10205-103F7;0.12499!10206-103F8;0.254651!10207-103F9;0.33888!10050-101G5;0.0394652!10051-101G6;0.0837686!10016-101C7;0.442081!10046-101G1;0.348446!10778-110G4;0.644702!10633-108I3;0.404789!10818-111B8;0.235587!10819-111B9;0.356917!10820-111C1;0.389275!10484-107A7;0.377706!10808-111A7;0.462654!10169-103B7;0.237655!10153-102I9;0.751088!13425-144D5;0.70738!13433-144E4;0.172802!13437-144E8;0.344781!11904-125F5;0.18208!11905-125F6;0.755458!10039-101F3;0.540522!10791-110H8;0.806296!10017-101C8;0.752867!10045-101F9;0.630386!10509-107D5;0.997191!10839-111E2;0.46244!10692-109F8;0.292922!10079-102A7;0.597372!10078-102A6;0.542244!10721-110A1;0.433977!10569-108B2;0.688947!10570-108B3;0.449413!10571-108B4;0.181322!10647-109A8;0.300206!10752-110D5;0.62276!10782-110G8;0.032839!10726-110A6;0.0361772!10018-101C9;0.761568!10086-102B5;0.970813!10182-103D2;0.0289539!10165-103B3;0.493702!10499-107C4;0.631141!10408-106B3;0.776619!10019-101D1;0.197447!10068-101I5;0.893464!10075-102A3;0.881452!10077-102A5;0.81282!10727-110A7;0.671274!10775-110G1;0.0507726!10412-106B7;0.403082!12231-129F8;0.747691!12232-129F9;0.773619!12233-129G1;0.683652!12234-129G2;0.617102!10414-106B9;0.500166!10170-103B8;0.382847!10183-103D3;0.83789!10150-102I6;0.819072!10174-103C3;0.653594!10155-103A2;0.508425!10038-101F2;0.645656!10838-111E1;0.581701!10759-110E3;0.307495!10514-107E1;0.807229!10465-106H6;0.908911!10691-109F7;0.439106!10843-111E6;0.0377652!10844-111E7;0.147329!11747-123G1;0.273764!11748-123G2;0.0678025!11749-123G3;0.0148492!11750-123G4;0.0652077!11751-123G5;0.0102153!11840-124H4;0.0481344!11752-123G6;0.143928!11753-123G7;0.580592!11754-123G8;0.197679!11755-123G9;0.391552!11756-123H1;0.299283!11833-124G6;0.257983!11760-123H5;0.169256!11836-124G9;0.547144!11758-123H3;0.0574501!11835-124G8;0.195962!11762-123H7;0.364141!11838-124H2;0.105073!11757-123H2;0.184388!11759-123H4;0.418503!11761-123H6;0.138693!11842-124H6;0.3066!11837-124H1;0.156788!10568-108B1;0.29268!13230-141I8;0.31756!13231-141I9;0.135301!10696-109G3;0.176448!10493-107B7;0.650624!10494-107B8;0.802204!10850-111F4;0.280866!10851-111F5;0.165048!10852-111F6;0.0223415!10853-111F7;0.0855527!10854-111F8;0.912898!10855-111F9;0.659349!10856-111G1;0.310132!10847-111F1;0.0356862!10846-111E9;0.353886!10848-111F2;0.147633!10845-111E8;0.695557!10857-111G2;0.910608!10858-111G3;0.986107!10156-103A3;0.0198012!11901-125F2;0.669067!11902-125F3;0.46428!11903-125F4;0.208856!10689-109F5;0.335195!10648-109A9;0.821192!10784-110H1;0.198726!10744-110C6;0.532974!10772-110F7;0.29588!10474-106I6;0.0775579!10600-108E6;0.168649!10684-109E9;0.303231!12226-129F3;0.909817!12227-129F4;0.607924!10508-107D4;0.291135!10539-107G8;0.177565!10607-108F4;0.408726!10555-107I6;0.23783!10774-110F9;0.228097!10637-108I7;0.9741!10663-109C6;0.730632!10728-110A8;0.848616!10729-110A9;0.824271!10430-106D7;0.0403476!10730-110B1;0.0441416!10813-111B3;0.235671!10812-111B2;0.0225098!10037-101F1;0.452747!10172-103C1;0.591583!10163-103B1;0.790507!10076-102A4;0.652652!10073-102A1;0.48705!10036-101E9;0.796689!10195-103E6;0.450389!10277-104E7;0.568854!10434-106E2;0.936062!10550-107I1;0.396502!10545-107H5;0.698726!10544-107H4;0.692979!10704-109H2;0.514139!10510-107D6;0.000904452!10558-107I9;0.83134!10020-101D2;0.123666!10732-110B3;0.659767!10049-101G4;0.0068486!10698-109G5;0.600076!10437-106E5;0.688484!10417-106C3;0.377303!10035-101E8;0.646776!10171-103B9;0.592494!10157-103A4;0.695229!10034-101E7;0.687395!10072-101I9;0.632872!10199-103F1;0.778429!10200-103F2;0.101132!10697-109G4;0.0166391!10723-110A3;0.820044!10179-103C8;0.350479!10160-103A7;0.573437!10180-103C9;0.8861!10162-103A9;0.880687!10021-101D3;0.716443!10840-111E3;0.816605!10706-109H4;0.00843964!10033-101E6;0.809494!10032-101E5;0.336173!10490-107B4;0.540884!10439-106E7;0.742151!10022-101D4;0.102027!10176-103C5;0.256748!10469-106I1;0.413965!10067-101I4;0.528025!10411-106B6;0.512796!10471-106I3;0.160513!10030-101E3;0.909776!10475-106I7;0.893476!10787-110H4;0.627189!10477-106I9;0.0502549!10695-109G2;0.337003!11771-123I7;0.211545!11772-123I8;0.216367!11773-123I9;0.56702!10093-102C3;0.81189!10442-106F1;0.130785!10442-106F1;0.325433!10201-103F3;0.352125!10639-108I9;0.76291!11843-124H7;0.408187!11841-124H5;0.860045!10693-109F9;0.554644!10436-106E4;0.293294!10483-107A6;0.235906!10282-104F3;0.346917!10023-101D5;0.0627296!10066-101I3;0.00782047!10065-101I2;0.312688!10800-110I8;0.148657!10610-108F7;0.182044!10841-111E4;0.814149!10541-107H1;0.674033!10842-111E5;0.325991!10562-108A4;0.261474!10024-101D6;0.344541!10064-101I1;0.258294!10609-108F6;0.395091!10048-101G3;0.535611!10781-110G7;0.738985!10181-103D1;0.512869!10159-103A6;0.543135!10056-101H2;0.949075!10737-110B8;0.298169!10025-101D7;0.123145!10044-101F8;0.280112!10424-106D1;0.203578!10463-106H4;0.147487!10616-108G4;0.957546!10486-107A9;0.490828!10062-101H8;0.351218!10202-103F4;0.431719!10158-103A5;0.105855!10441-106E9;0.730387!10031-101E4;0.679571!10063-101H9;0.641056!10063-101H9;0.551541!11763-123H8;0.848441!11765-123I1;0.130616!11768-123I4;0.00758855!10807-111A6;0.0434383!10790-110H7;0.521458!10798-110I6;0.996702!10786-110H3;0.44693!10591-108D6;0.60528!10593-108D8;0.586139!10590-108D5;0.82992!10026-101D8;0.711119!10096-102C6;0.118138!10168-103B6;0.0284795!10154-103A1;0.520319!10209-103G2;0.501939!10061-101H7;0.0415784!10027-101D9;0.0738614!10043-101F7;0.479434!10783-110G9;0.449146!10028-101E1;0.906169!10060-101H6;0.546589!10203-103F5;0.569816!10059-101H5;0.00548642!10047-101G2;0.0663726!10029-101E2;0.480341!10058-101H4;0.0938283!10418-106C4;0.0190407!10492-107B6;0.965332!10694-109G1;0.160873!10797-110I5;0.255007!10057-101H3;0.819741!10100-102D1;0.0141834!10055-101H1;0.502952!10204-103F6;0.925274!10191-103E2;0.911464!10563-108A5;0.95282
|name=CNhs13099_bu_f2
|name=CNhs13099_bu_f2
|tomtom_result=SFL1#MA0377.1;4;0.000285183;0.135747;0.271494;12;GTTTAGAATAAA;TAGAGAATAGAAGAAATAAAA;+!SFP1#MA0378.1;0;0.00370384;1.76303;1;12;GTTTAGAATAAA;ATTGAAAAAAATTTTCTACGG;+!sd#MA0243.1;0;0.00431825;2.05549;1;12;GTTTAGAATAAA;CCGAGGAATGTC;-!Pax4#MA0068.1;7;0.0070641;3.36251;1;12;GTTTAGAATAAA;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!squamosa#MA0082.1;4;0.00716471;3.4104;1;10;GTTTAGAATAAA;CCAAAAATGGAAAT;+!NFATC2#MA0152.1;-3;0.00945297;4.49962;1;7;GTTTAGAATAAA;TGGAAAA;-!RLM1#MA0369.1;8;0.0129807;6.17882;1;10;GTTTAGAATAAA;GAATCTATTTATAGAACT;-!ELF5#MA0136.1;-2;0.0134753;6.41422;1;9;GTTTAGAATAAA;AAGGAAGTA;-!EDS1#MA0294.1;-3;0.0134753;6.41422;1;9;GTTTAGAATAAA;CGGAAAAAT;+!SRY#MA0084.1;0;0.015383;7.32228;1;9;GTTTAGAATAAA;GTAAACAAT;+!NHP6B#MA0346.1;5;0.0201008;9.56799;1;12;GTTTAGAATAAA;TCATATTATATATAAATAAA;-!TEC1#MA0406.1;-3;0.0205264;9.77057;1;8;GTTTAGAATAAA;GGGAATGT;-!STAT1#MA0137.2;4;0.0208143;9.9076;1;11;GTTTAGAATAAA;GGTTTCCGGGAAATG;-
}}
}}

Latest revision as of 12:17, 7 September 2012

Full Name: CNhs13099_bu_f2

Motif matrix
POACGT
154.129261744569837.99333197373956212.11942448799863109.46577873362796
2122.850246088900474.9039541526268251.67841478082961164.27518191757926
3118.4222437238759848.9895339271438482.84918246965233163.446836819264
4116.3610510853001918.13963180840419110.84014399730192168.3669700489297
5213.021117072556362.4834984620433267189.944615434182578.258565971153619
66.1045217031394710.6010028996267426406.401269437542850.6010028996267426
7410.92189790028440.399206125367940530.201136184468154462.1855567298151777
8410.329456440192761.63734210313363621.00587239561722130.7351260009922151
9164.26808849536736.00552236587385147.274309539422646196.1598765392722
10142.5422233383166628.666375351775045109.33171836923992133.16747988060442
11194.9462001573564358.71353306299925490.7410133475176769.30705037206266
12197.7320200730650620.3820866394473362.9088366426933132.6848535847303

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SFL1#MA0377.140.0002851830.1357470.27149412GTTTAGAATAAATAGAGAATAGAAGAAATAAAA+
SFP1#MA0378.100.003703841.76303112GTTTAGAATAAAATTGAAAAAAATTTTCTACGG+
sd#MA0243.100.004318252.05549112GTTTAGAATAAACCGAGGAATGTC-
Pax4#MA0068.170.00706413.36251112GTTTAGAATAAAGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
squamosa#MA0082.140.007164713.4104110GTTTAGAATAAACCAAAAATGGAAAT+
NFATC2#MA0152.1-30.009452974.4996217GTTTAGAATAAATGGAAAA-
RLM1#MA0369.180.01298076.17882110GTTTAGAATAAAGAATCTATTTATAGAACT-
ELF5#MA0136.1-20.01347536.4142219GTTTAGAATAAAAAGGAAGTA-
EDS1#MA0294.1-30.01347536.4142219GTTTAGAATAAACGGAAAAAT+
SRY#MA0084.100.0153837.3222819GTTTAGAATAAAGTAAACAAT+
NHP6B#MA0346.150.02010089.56799112GTTTAGAATAAATCATATTATATATAAATAAA-
TEC1#MA0406.1-30.02052649.7705718GTTTAGAATAAAGGGAATGT-
STAT1#MA0137.240.02081439.9076111GTTTAGAATAAAGGTTTCCGGGAAATG-
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