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MacroAPE 1083:Motif TTGNCA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;55120!02;0;0;0;55120!03;0;0;55120;0!04;13780;13780;13780;13780!05;0;55120;0;0!06;55120;0;0;0 |macroape_1083_sample_pvalues=11376-118...")
 
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02!10788-110H5;0.500208!10792-110H9;0.45132!10765-110E9;0.609923!10829-111D1;0.471977!10830-111D2;0.777187!10831-111D3;0.467299!10832-111D4;0.386141!10833-111D5;0.50372!10764-110E8;0.491884!10770-110F5;0.367864!10399-106A3;0.0933141!10400-106A4;0.53387!10405-106A9;0.484884!10834-111D6;0.598395!10835-111D7;0.577344!10836-111D8;0.613382!10837-111D9;0.847616!10699-109G6;0.735546!10802-111A1;0.686053!10796-110I4;0.284601!10010-101C1;0.217336!10810-111A9;0.329295!10421-106C7;0.691474!10708-109H6;0.351573!12235-129G3;0.945453!12236-129G4;0.841196!12237-129G5;0.738347!10167-103B5;0.798124!10151-102I7;0.200176!10428-106D5;0.211833!10795-110I3;0.32804!10805-111A4;0.289515!10052-101G7;0.847251!10189-103D9;0.458984!10589-108D4;0.979162!10425-106D2;0.607254!10427-106D4;0.336833!10702-109G9;0.483543!10432-106D9;0.979073!10496-107C1;0.405904!10718-109I7;0.432582!10011-101C2;0.248052!10053-101G8;0.475856!10686-109F2;0.742667!10084-102B3;0.629742!10012-101C3;0.234793!10085-102B4;0.296656!10482-107A5;0.274127!10419-106C5;0.748426!10080-102A8;0.898031!10760-110E4;0.147698!10709-109H7;0.393544!10710-109H8;0.616499!10703-109H1;0.718029!10719-109I8;0.559828!10642-109A3;0.539387!10177-103C6;0.697987!10164-103B2;0.212419!10173-103C2;0.172809!10166-103B4;0.443833!10083-102B2;0.318461!10188-103D8;0.419449!10552-107I3;0.298829!10553-107I4;0.902611!10013-101C4;0.701761!10536-107G5;0.151345!10618-108G6;0.393545!10423-106C9;0.357632!10785-110H2;0.237289!12238-129G6;0.123581!12239-129G7;0.805496!12240-129G8;0.963669!10416-106C2;0.486905!10801-110I9;0.844808!10766-110F1;0.34616!10824-111C5;0.669571!10825-111C6;0.434316!10826-111C7;0.38814!10454-106G4;0.459581!10409-106B4;0.588826!10638-108I8;0.914648!10636-108I6;0.545258!10513-107D9;0.613938!10420-106C6;0.257073!10082-102B1;0.974917!10014-101C5;0.796104!10070-101I7;0.73!10452-106G2;0.732447!10453-106G3;0.982628!10449-106F8;0.886544!10042-101F6;0.919934!10069-101I6;0.217605!10193-103E4;0.176877!10631-108I1;0.290868!10438-106E6;0.90193!10488-107B2;0.607458!10196-103E7;0.607523!10071-101I8;0.297293!10071-101I8;0.502602!10041-101F5;0.190828!10451-106G1;0.259574!10450-106F9;0.894671!10604-108F1;0.792152!10605-108F2;0.522068!10606-108F3;0.616817!10603-108E9;0.566178!10497-107C2;0.565487!10448-106F7;0.543938!10643-109A4;0.894242!10426-106D3;0.710549!10431-106D8;0.427204!10197-103E8;0.23212!10443-106F2;0.133937!10815-111B5;0.618702!10816-111B6;0.965723!10817-111B7;0.981316!10015-101C6;0.893738!10410-106B5;0.475595!10054-101G9;0.709797!10758-110E2;0.235028!10711-109H9;0.267917!10040-101F4;0.311043!10470-106I2;0.244324!10415-106C1;0.964592!10198-103E9;0.212161!10614-108G2;0.511332!10612-108F9;0.6855!10549-107H9;0.588205!10615-108G3;0.946959!10487-107B1;0.397337!10433-106E1;0.705599!10688-109F4;0.548521!10444-106F3;0.71255!10444-106F3;0.769197!10485-107A8;0.819325!10413-106B8;0.586324!10175-103C4;0.99819!10161-103A8;0.405171!12131-128D7;0.252062!10624-108H3;0.489588!10712-109I1;0.665494!10205-103F7;0.77119!10206-103F8;0.407411!10207-103F9;0.520663!10050-101G5;0.896813!10051-101G6;0.859809!10016-101C7;0.581586!10046-101G1;0.64851!10778-110G4;0.459461!10633-108I3;0.977145!10818-111B8;0.480626!10819-111B9;0.170822!10820-111C1;0.18731!10484-107A7;0.189496!10808-111A7;0.60477!10169-103B7;0.552856!10153-102I9;0.276886!13425-144D5;0.188333!13433-144E4;0.181003!13437-144E8;0.201144!11904-125F5;0.242085!11905-125F6;0.904708!10039-101F3;0.910544!10791-110H8;0.245153!10017-101C8;0.535602!10045-101F9;0.405708!10509-107D5;0.30475!10839-111E2;0.537093!10692-109F8;0.967477!10079-102A7;0.447101!10078-102A6;0.754801!10721-110A1;0.634289!10569-108B2;0.933813!10570-108B3;0.531892!10571-108B4;0.786137!10647-109A8;0.633355!10752-110D5;0.987696!10782-110G8;0.596139!10726-110A6;0.930292!10018-101C9;0.313653!10086-102B5;0.925341!10182-103D2;0.242768!10165-103B3;0.44141!10499-107C4;0.298336!10408-106B3;0.91112!10019-101D1;0.281614!10068-101I5;0.208666!10075-102A3;0.0400669!10077-102A5;0.11352!10727-110A7;0.961678!10775-110G1;0.32759!10412-106B7;0.794565!12231-129F8;0.680347!12232-129F9;0.482072!12233-129G1;0.279924!12234-129G2;0.555845!10414-106B9;0.409919!10170-103B8;0.997218!10183-103D3;0.338136!10150-102I6;0.247855!10174-103C3;0.294597!10155-103A2;0.161014!10038-101F2;0.22221!10838-111E1;0.31672!10759-110E3;0.562555!10514-107E1;0.533001!10465-106H6;0.867219!10691-109F7;0.720395!10843-111E6;0.123739!10844-111E7;0.928009!11747-123G1;0.85477!11748-123G2;0.934609!11749-123G3;0.975164!11750-123G4;0.996172!11751-123G5;0.872828!11840-124H4;0.610568!11752-123G6;0.693817!11753-123G7;0.50998!11754-123G8;0.870269!11755-123G9;0.864024!11756-123H1;0.183995!11833-124G6;0.445318!11760-123H5;0.351126!11836-124G9;0.689531!11758-123H3;0.831667!11835-124G8;0.824947!11762-123H7;0.740578!11838-124H2;0.693681!11757-123H2;0.872238!11759-123H4;0.714942!11761-123H6;0.428081!11842-124H6;0.90092!11837-124H1;0.328808!10568-108B1;0.79973!13230-141I8;0.532314!13231-141I9;0.429151!10696-109G3;0.428735!10493-107B7;0.13994!10494-107B8;0.440311!10850-111F4;0.784154!10851-111F5;0.5842!10852-111F6;0.923786!10853-111F7;0.918216!10854-111F8;0.543919!10855-111F9;0.778489!10856-111G1;0.960857!10847-111F1;0.805968!10846-111E9;0.414443!10848-111F2;0.633295!10845-111E8;0.373102!10857-111G2;0.931993!10858-111G3;0.569699!10156-103A3;0.574951!11901-125F2;0.24491!11902-125F3;0.996309!11903-125F4;0.814891!10689-109F5;0.587656!10648-109A9;0.665621!10784-110H1;0.254473!10744-110C6;0.250169!10772-110F7;0.12484!10474-106I6;0.393733!10600-108E6;0.61849!10684-109E9;0.450131!12226-129F3;0.670402!12227-129F4;0.244279!10508-107D4;0.817948!10539-107G8;0.833688!10607-108F4;0.752936!10555-107I6;0.730284!10774-110F9;0.683587!10637-108I7;0.744521!10663-109C6;0.803547!10728-110A8;0.679236!10729-110A9;0.99844!10430-106D7;0.685416!10730-110B1;0.447699!10813-111B3;0.535888!10812-111B2;0.821908!10037-101F1;0.939606!10172-103C1;0.23493!10163-103B1;0.321981!10076-102A4;0.293487!10073-102A1;0.27108!10036-101E9;0.255116!10195-103E6;0.324518!10277-104E7;0.219521!10434-106E2;0.144626!10550-107I1;0.687478!10545-107H5;0.637892!10544-107H4;0.563247!10704-109H2;0.75014!10510-107D6;0.428407!10558-107I9;0.437903!10020-101D2;0.0918236!10732-110B3;0.0855742!10049-101G4;0.565313!10698-109G5;0.809439!10437-106E5;0.401874!10417-106C3;0.766069!10035-101E8;0.417065!10171-103B9;0.294693!10157-103A4;0.335796!10034-101E7;0.298032!10072-101I9;0.288965!10199-103F1;0.195673!10200-103F2;0.524646!10697-109G4;0.245093!10723-110A3;0.854947!10179-103C8;0.547592!10160-103A7;0.425027!10180-103C9;0.224094!10162-103A9;0.246742!10021-101D3;0.152023!10840-111E3;0.593755!10706-109H4;0.211435!10033-101E6;0.440472!10032-101E5;0.414029!10490-107B4;0.298575!10439-106E7;0.816347!10022-101D4;0.707546!10176-103C5;0.32134!10469-106I1;0.217003!10067-101I4;0.458641!10411-106B6;0.448192!10471-106I3;0.77661!10030-101E3;0.417083!10475-106I7;0.452029!10787-110H4;0.955518!10477-106I9;0.596155!10695-109G2;0.305732!11771-123I7;0.844688!11772-123I8;0.354675!11773-123I9;0.438112!10093-102C3;0.710739!10442-106F1;0.524894!10442-106F1;0.41891!10201-103F3;0.396301!10639-108I9;0.364811!11843-124H7;0.87603!11841-124H5;0.495674!10693-109F9;0.940443!10436-106E4;0.672262!10483-107A6;0.387896!10282-104F3;0.448159!10023-101D5;0.40741!10066-101I3;0.416056!10065-101I2;0.187105!10800-110I8;0.25882!10610-108F7;0.589491!10841-111E4;0.585208!10541-107H1;0.6495!10842-111E5;0.860751!10562-108A4;0.607193!10024-101D6;0.910134!10064-101I1;0.909115!10609-108F6;0.861351!10048-101G3;0.503891!10781-110G7;0.232488!10181-103D1;0.983375!10159-103A6;0.324571!10056-101H2;0.281185!10737-110B8;0.198592!10025-101D7;0.862254!10044-101F8;0.970977!10424-106D1;0.640166!10463-106H4;0.204209!10616-108G4;0.534589!10486-107A9;0.303654!10062-101H8;0.861934!10202-103F4;0.627663!10158-103A5;0.425486!10441-106E9;0.210991!10031-101E4;0.374724!10063-101H9;0.283046!10063-101H9;0.228832!11763-123H8;0.447897!11765-123I1;0.613228!11768-123I4;0.247938!10807-111A6;0.387228!10790-110H7;0.619903!10798-110I6;0.663572!10786-110H3;0.820175!10591-108D6;0.194304!10593-108D8;0.456991!10590-108D5;0.180371!10026-101D8;0.666734!10096-102C6;0.00516556!10168-103B6;0.0428845!10154-103A1;0.314693!10209-103G2;0.21038!10061-101H7;0.247367!10027-101D9;0.128432!10043-101F7;0.712718!10783-110G9;0.421246!10028-101E1;0.786945!10060-101H6;0.148854!10203-103F5;0.0681438!10059-101H5;0.412409!10047-101G2;0.341957!10029-101E2;0.879587!10058-101H4;0.282172!10418-106C4;0.15407!10492-107B6;0.721844!10694-109G1;0.433248!10797-110I5;0.916453!10057-101H3;0.667003!10100-102D1;0.385636!10055-101H1;0.143021!10204-103F6;0.209236!10191-103E2;0.211132!10563-108A5;0.595653
|name=motif_TTGNCA
|name=motif_TTGNCA
|tomtom_result=NFIC#MA0161.1;0;0.00130703;0.622148;0.934516;6;TTGACA;TTGGCA;+!TOS8#MA0408.1;1;0.0020561;0.978705;0.934516;6;TTGACA;TTTGACAG;-!exd#MA0222.1;2;0.00344468;1.63967;0.934516;6;TTGACA;TTTTGACA;+!RIM101#MA0368.1;1;0.00392654;1.86903;0.934516;6;TTGACA;CTTGGCG;-!RFX1#MA0365.1;2;0.0066409;3.16107;1;6;TTGACA;GGTTGCTA;+!TLX1::NFIC#MA0119.1;0;0.0107517;5.1178;1;6;TTGACA;TTGGCATGGTGCCA;-!achi#MA0207.1;0;0.0115506;5.49811;1;6;TTGACA;CTGTCA;-!vis#MA0252.1;0;0.0125479;5.9728;1;6;TTGACA;CTGTCA;-!hth#MA0227.1;-1;0.0162897;7.7539;1;5;TTGACA;TGACAG;+!HAP2#MA0313.1;0;0.0176925;8.42161;1;5;TTGACA;TTGGT;+!CG11617#MA0173.1;0;0.0179366;8.5378;1;6;TTGACA;TTAACAT;+
}}
}}

Latest revision as of 12:24, 7 September 2012

Full Name: motif_TTGNCA

Motif matrix
POACGT
0100055120
0200055120
0300551200
0413780137801378013780
0505512000
0655120000

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFIC#MA0161.100.001307030.6221480.9345166TTGACATTGGCA+
TOS8#MA0408.110.00205610.9787050.9345166TTGACATTTGACAG-
exd#MA0222.120.003444681.639670.9345166TTGACATTTTGACA+
RIM101#MA0368.110.003926541.869030.9345166TTGACACTTGGCG-
RFX1#MA0365.120.00664093.1610716TTGACAGGTTGCTA+
TLX1::NFIC#MA0119.100.01075175.117816TTGACATTGGCATGGTGCCA-
achi#MA0207.100.01155065.4981116TTGACACTGTCA-
vis#MA0252.100.01254795.972816TTGACACTGTCA-
hth#MA0227.1-10.01628977.753915TTGACATGACAG+
HAP2#MA0313.100.01769258.4216115TTGACATTGGT+
CG11617#MA0173.100.01793668.537816TTGACATTAACAT+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:Motif_TTGNCA&oldid=2133639"