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de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by [http://autosome.ru/macroape/ MacroApe]
de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by [http://autosome.ru/macroape/ MacroApe]
     </td>
     </td>
     <td>
     <td> <ul><li>[[MacroAPE_1083:FOXD1_si|FOXD1_si]]</li></ul> </td>
{{#ask:[[Category:MacroAPE_1083]]
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    </td>
     <td>
     <td>
[[Browse_MacroAPE|MacroAPE]]
[[Browse_MacroAPE|MacroAPE]]
[[Browse_swissregulon|Swissregulon]]
</td>
</td>
   </tr>
   </tr>
   <tr>
   <tr>
     <td>'''Genes'''</td>
     <td>'''Transcription factors'''</td>
     <td>
     <td>
Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia.
Transcription factors.
     </td>
     </td>
     <td>
     <td> <ul><li>[[EntrezGene:6657|SOX2]]</li></ul>
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     </td>
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   </tr>
   </tr>
   <tr>
   <tr>
     <td>'''Ontologies'''</td>
     <td>'''Sample classifications'''</td>
    <td>
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    </td>
     <td>
     <td>
{{#ask:[[Category:FF_Terms]]
Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology, consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON).
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     </td>
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    <td> <ul><li>[[CL:0000192|smooth muscle cell]]</li></ul>    </td>
     <td>
     <td>
[[FF_Ontology_terms_list|FANTOM5 (FF)]]
[[FF_Ontology_terms_list|FANTOM5 (FF)]]

Revision as of 19:53, 22 November 2012

FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project


Gene Search
Examples Browse
Samples Details of profiled samples (incl. primary cells, cell lines, and tissues)

Samples by name

Samples by categories

Samples by series

Samples by data type

Co-expression

CAGE peaks (TSS regions) are grouped based on expression, by using MCL

Human

Mouse

MOTIFs

de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by MacroApe

MacroAPE

Transcription factors

Transcription factors.

Genes

TSSs

TFs

Sample classifications

Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology, consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON).

FANTOM5 (FF)

Cell Type (CL)

Disease (DOID)

Anatomy (UBERON)

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