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     <td>'''MOTIFs'''</td>
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     <td>'''Motifs'''</td>
 
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de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by [http://autosome.ru/macroape/ MacroApe]
 
de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by [http://autosome.ru/macroape/ MacroApe]

Revision as of 11:33, 22 November 2012

FANTOM5 SSTAR (Semantic catalog of Samples, Transcription initiation And Regulators) provide a way to explore samples, transcriptional initiations, and regulators analyzed in the FANTOM5 project


Gene Search
Examples Browse
Samples Details of profiled samples (incl. primary cells, cell lines, and tissues)

human

mouse

Sample classifications

Samples profiled in FANTOM5 are systematically classified by defining FANTON5 sample ontology, consisting of Cell type (CL), Diseases (DOID), and Anatomy (UBERON).

Cell Type (CL)

Disease (DOID)

Anatomy (UBERON)

FANTOM5 (FF)

Co-expression

CAGE peaks (TSS regions) are grouped based on expression, by using MCL

Human

Mouse

Motifs

de-novo motifs discovered in the proximal region to the CAGE peaks, which are grouped by MacroApe

MacroAPE

Transcription factors

Transcription factors.

human

mouse