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{{MotifCluster2013March
{{Known_motif
|motif_cluster_2013_march_subclusters= /JASPAR:MA0125.1;Nobox,MA0063.1;Nkx2-5,MA0135.1;Lhx3,MA0075.1;Prrx2,MA0151.1;ARID3A /UNIPROBE:Hoxb5_3122.2;CELL08,Meox1_2310.2;CELL08,Lhx1_2240.2;CELL08,Hmx1_3423.1;CELL08,Hoxc9_2367.2;CELL08,Hoxa1_3425.1;CELL08,Pou3f4_3773.1;CELL08,Gbx2_3110.1;CELL08,Uncx4.1_2281.2;CELL08,Barx2_3447.2;CELL08,Nkx6-3_3446.1;CELL08,Prrx2_3072.1;CELL08,Ipf1_3815.1;CELL08,Hoxb8_3780.2;CELL08,Hoxd1_3448.1;CELL08,Vax2_3500.1;CELL08,Msx3_3206.1;CELL08,Barhl2_3868.1;CELL08,En1_3123.2;CELL08,Hoxb6_3428.2;CELL08,Og2x_3719.1;CELL08,Hoxc5_2630.2;CELL08,Otp_3496.1;CELL08,Isl2_3430.1;CELL08,Dlx1_1741.2;CELL08,Hoxa3_2783.2;CELL08,Nkx6-1_2825.2;CELL08,Hoxb4_2627.1;CELL08,Hlxb9_3422.1;CELL08,Phox2a_3947.1;CELL08,Cart1_1275.1;CELL08,Hoxa4_3426.1;CELL08,Arid3a_primary;SCI09,Lhx6_2272.1;CELL08,Gbx1_2883.2;CELL08,Dbx1_3486.1;CELL08,Pou1f1_3818.1;CELL08,En2_0952.1;CELL08,Hoxd8_2644.1;CELL08,Nkx1-1_3856.3;CELL08,Hoxc8_3429.2;CELL08,Prrx1_3442.1;CELL08,Hoxc4_3491.1;CELL08,Pou6f1_1731.2;CELL08,Nkx1-2_3214.1;CELL08,Lmx1b_3433.2;CELL08,Msx1_3031.2;CELL08,Prop1_3949.1;CELL08,Pou2f1_3081.2;CELL08,Hoxa5_3415.1;CELL08,Hoxa3_primary;SCI09,Pax7_3783.1;CELL08,Evx2_2645.3;CELL08,Pou3f2_2824.1;CELL08,Vsx1_1728.1;CELL08,Cutl1_3494.1;CELL08,Pou4f3_2791.1;CELL08,Dbx2_3487.1;CELL08,Vax1_3499.1;CELL08,Pax6_3838.3;CELL08,Shox2_2641.2;CELL08,Hoxb3_1720.2;CELL08,Dlx3_1030.1;CELL08,Gsh2_3990.2;CELL08,Hoxa2_3079.1;CELL08,Hoxa7_3750.1;CELL08,Lhx4_1719.2;CELL08,Hoxb7_3953.1;CELL08,Lhx8_2247.2;CELL08,Lhx3_3431.1;CELL08,Hoxd3_1742.2;CELL08,Pou3f1_3819.1;CELL08,Hlx1_2350.1;CELL08,Lhx2_0953.2;CELL08,Barx1_2877.1;CELL08,Pax4_3989.2;CELL08,Bapx1_2343.1;CELL08,Hoxc6_3954.2;CELL08,Phox2b_3948.1;CELL08,Msx2_3449.1;CELL08,Rhox6_4251.1;CELL08,Hmx3_3490.2;CELL08,Evx1_3952.2;CELL08,Nkx6-1_2825.1;CELL08,Barhl1_2590.2;CELL08,Emx2_3420.1;CELL08,Lhx6_3432.1;CELL08,Dlx2_2273.2;CELL08,Hoxa6_1040.1;CELL08,Arx_1738.2;CELL08,Rax_3443.1;CELL08,Esx1_3124.2;CELL08,Hoxa7_2668.2;CELL08,Cart1_0997.1;CELL08,Hmx2_3424.3;CELL08,Lbx2_3869.2;CELL08,Nkx3-1_primary;SCI09,Bsx_3483.2;CELL08,Tlx2_3498.2;CELL08,Pou6f1_3733.1;CELL08,Lhx5_2279.1;CELL08,Isx_3445.1;CELL08,Dlx5_3419.2;CELL08,Lhx9_3492.1;CELL08,Alx3_3418.2;CELL08,Dlx4_3488.2;CELL08,Alx4_1744.1;CELL08,Lmx1a_2238.2;CELL08 /SWISSREGULON:NANOG.p2,VSX1,2.p2,LHX3,4.p2,PRRX1,2.p2,PDX1.p2,NKX2-3_NKX2-5.p2,ADNP_IRX_SIX_ZHX.p2 /HOCOMOCO:HXD9_f1,LHX3_f1,DLX3_do,PO4F2_si,PDX1_do,MSX2_f1,DLX2_f1,HXD4_f1,VSX2_si,ZFHX3_f1,BARX2_si,HXC8_f1,PRRX2_f1,NOBOX_si,ARI3A_f1,HXA5_si
|motif_cluster_2013_march_subclusters= /JASPAR:MA0125.1;Nobox,MA0063.1;Nkx2-5,MA0135.1;Lhx3,MA0075.1;Prrx2,MA0151.1;ARID3A /UNIPROBE:Hoxb5_3122.2;CELL08,Meox1_2310.2;CELL08,Lhx1_2240.2;CELL08,Hmx1_3423.1;CELL08,Hoxc9_2367.2;CELL08,Hoxa1_3425.1;CELL08,Pou3f4_3773.1;CELL08,Gbx2_3110.1;CELL08,Uncx4.1_2281.2;CELL08,Barx2_3447.2;CELL08,Nkx6-3_3446.1;CELL08,Prrx2_3072.1;CELL08,Ipf1_3815.1;CELL08,Hoxb8_3780.2;CELL08,Hoxd1_3448.1;CELL08,Vax2_3500.1;CELL08,Msx3_3206.1;CELL08,Barhl2_3868.1;CELL08,En1_3123.2;CELL08,Hoxb6_3428.2;CELL08,Og2x_3719.1;CELL08,Hoxc5_2630.2;CELL08,Otp_3496.1;CELL08,Isl2_3430.1;CELL08,Dlx1_1741.2;CELL08,Hoxa3_2783.2;CELL08,Nkx6-1_2825.2;CELL08,Hoxb4_2627.1;CELL08,Hlxb9_3422.1;CELL08,Phox2a_3947.1;CELL08,Cart1_1275.1;CELL08,Hoxa4_3426.1;CELL08,Arid3a_primary;SCI09,Lhx6_2272.1;CELL08,Gbx1_2883.2;CELL08,Dbx1_3486.1;CELL08,Pou1f1_3818.1;CELL08,En2_0952.1;CELL08,Hoxd8_2644.1;CELL08,Nkx1-1_3856.3;CELL08,Hoxc8_3429.2;CELL08,Prrx1_3442.1;CELL08,Hoxc4_3491.1;CELL08,Pou6f1_1731.2;CELL08,Nkx1-2_3214.1;CELL08,Lmx1b_3433.2;CELL08,Msx1_3031.2;CELL08,Prop1_3949.1;CELL08,Pou2f1_3081.2;CELL08,Hoxa5_3415.1;CELL08,Hoxa3_primary;SCI09,Pax7_3783.1;CELL08,Evx2_2645.3;CELL08,Pou3f2_2824.1;CELL08,Vsx1_1728.1;CELL08,Cutl1_3494.1;CELL08,Pou4f3_2791.1;CELL08,Dbx2_3487.1;CELL08,Vax1_3499.1;CELL08,Pax6_3838.3;CELL08,Shox2_2641.2;CELL08,Hoxb3_1720.2;CELL08,Dlx3_1030.1;CELL08,Gsh2_3990.2;CELL08,Hoxa2_3079.1;CELL08,Hoxa7_3750.1;CELL08,Lhx4_1719.2;CELL08,Hoxb7_3953.1;CELL08,Lhx8_2247.2;CELL08,Lhx3_3431.1;CELL08,Hoxd3_1742.2;CELL08,Pou3f1_3819.1;CELL08,Hlx1_2350.1;CELL08,Lhx2_0953.2;CELL08,Barx1_2877.1;CELL08,Pax4_3989.2;CELL08,Bapx1_2343.1;CELL08,Hoxc6_3954.2;CELL08,Phox2b_3948.1;CELL08,Msx2_3449.1;CELL08,Rhox6_4251.1;CELL08,Hmx3_3490.2;CELL08,Evx1_3952.2;CELL08,Nkx6-1_2825.1;CELL08,Barhl1_2590.2;CELL08,Emx2_3420.1;CELL08,Lhx6_3432.1;CELL08,Dlx2_2273.2;CELL08,Hoxa6_1040.1;CELL08,Arx_1738.2;CELL08,Rax_3443.1;CELL08,Esx1_3124.2;CELL08,Hoxa7_2668.2;CELL08,Cart1_0997.1;CELL08,Hmx2_3424.3;CELL08,Lbx2_3869.2;CELL08,Nkx3-1_primary;SCI09,Bsx_3483.2;CELL08,Tlx2_3498.2;CELL08,Pou6f1_3733.1;CELL08,Lhx5_2279.1;CELL08,Isx_3445.1;CELL08,Dlx5_3419.2;CELL08,Lhx9_3492.1;CELL08,Alx3_3418.2;CELL08,Dlx4_3488.2;CELL08,Alx4_1744.1;CELL08,Lmx1a_2238.2;CELL08 /SWISSREGULON:NANOG.p2,VSX1,2.p2,LHX3,4.p2,PRRX1,2.p2,PDX1.p2,NKX2-3_NKX2-5.p2,ADNP_IRX_SIX_ZHX.p2 /HOCOMOCO:HXD9_f1,LHX3_f1,DLX3_do,PO4F2_si,PDX1_do,MSX2_f1,DLX2_f1,HXD4_f1,VSX2_si,ZFHX3_f1,BARX2_si,HXC8_f1,PRRX2_f1,NOBOX_si,ARI3A_f1,HXA5_si
|name=known1
|name=known1

Revision as of 10:57, 25 April 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known1
  • db :HOCOMOCO
  • Id :ARI3A_f1
  • name  :
  • score :0.16970272024724345
  • External refs:
EntrezGene:{{{entrez_gene_id}}}
UniProt:{{{entrez_gene_id}}}

  • Internal refs:
[[EntrezGene:{{{entrez_gene_id}}}]]


Motif matrix
{{{PWM}}}

Sub Motif Members

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