NonredundantMotifs:10: Difference between revisions
From FANTOM5_SSTAR
m (Autoedit moved page NonredundantMotifs:Motif10 to NonredundantMotifs:10 without leaving a redirect: NSchange) |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;131.518756;410.442575;333.596143000001;20.312073!2;87.985988;445.171425;129.15353;233.558604!3;220.416276;21.176247;636.079004;18.19802!4;1.720719;881.617294;3.461966;9.069568!5;859.513512999999;0.880742;32.912279;2.563013!6;0;868.487859;6.06783;21.313858!7;2.61893;848.468946999999;44.78167;0!8;0;1.677913;0;894.191633999999!9;2.543581;1.621881;886.549804999999;5.15428!10;18.09673;206.853461;386.397542;284.521814!11;147.679327;130.283902;476.031602;141.874716!12;126.949105;512.472689;196.801828;59.645925 | |PWM=PO;A;C;G;T!1;131.518756;410.442575;333.596143000001;20.312073!2;87.985988;445.171425;129.15353;233.558604!3;220.416276;21.176247;636.079004;18.19802!4;1.720719;881.617294;3.461966;9.069568!5;859.513512999999;0.880742;32.912279;2.563013!6;0;868.487859;6.06783;21.313858!7;2.61893;848.468946999999;44.78167;0!8;0;1.677913;0;894.191633999999!9;2.543581;1.621881;886.549804999999;5.15428!10;18.09673;206.853461;386.397542;284.521814!11;147.679327;130.283902;476.031602;141.874716!12;126.949105;512.472689;196.801828;59.645925 | ||
|entrez_gene_id= | |entrez_gene_id=6935 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TFE2_f2~NDF1_f1~TAL1_f1~ITF2_f1~SNAI2_f1~TWST1_f1~SNAI1_f1~ZN238_f1~TAL1_f2 /HOMER:ATOH1_Cerebellum-Atoh1-ChIP-Seq~TAL1_motifA;HPC7-Scl-ChIP-Seq~NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)~OLIG2_Neuron-Olig2-ChIP-Seq(GSE30882) /JASPAR:MA0091.1;TAL1::TCF3 /SWISSREGULON:ZNF238.p2~SNAI1..3.p2~MYOD1.p2~ZEB1.p2~TAL1_TCF(3,4,12).p2~LMO2.p2 /UNIPROBE:Tcfe2a_primary;SCI09~Tcfe2a_secondary;SCI09~Myf6_primary;SCI09 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:TFE2_f2~NDF1_f1~TAL1_f1~ITF2_f1~SNAI2_f1~TWST1_f1~SNAI1_f1~ZN238_f1~TAL1_f2 /HOMER:ATOH1_Cerebellum-Atoh1-ChIP-Seq~TAL1_motifA;HPC7-Scl-ChIP-Seq~NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)~OLIG2_Neuron-Olig2-ChIP-Seq(GSE30882) /JASPAR:MA0091.1;TAL1::TCF3 /SWISSREGULON:ZNF238.p2~SNAI1..3.p2~MYOD1.p2~ZEB1.p2~TAL1_TCF(3,4,12).p2~LMO2.p2 /UNIPROBE:Tcfe2a_primary;SCI09~Tcfe2a_secondary;SCI09~Myf6_primary;SCI09 | ||
|name=non-redundant10 | |name=non-redundant10 | ||
Latest revision as of 15:42, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant10
- db :SWISSREGULON
- Id :ZEB1.p2
- name :ZEB1
- score :0.8111344501518296
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
