Personal tools

NonredundantMotifs:106

From FANTOM5_SSTAR

Revision as of 01:21, 30 May 2013 by Autoedit (talk | contribs) (Autoedit moved page NonredundantMotifs:Motif106 to NonredundantMotifs:106 without leaving a redirect: NSchange)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant106
  • db :UNIPROBE
  • Id :E2F2_secondary
  • name :SCI09
  • score :1.8769964180688634
  • External refs:
EntrezGene:1870
UniProt:1870

  • Internal refs:
EntrezGene:1870


Motif matrix
P0ACGT
10.27044014664720.2808545639965970.1822539326484630.26645135670774
20.2322938245532870.2865767419215890.2870219894432110.194107444081914
30.1827186488115510.2895236456916660.1877264745227590.340031230974024
40.321667540592330.0553833822278650.1296041845406570.493344892639148
50.105970940352250.4769887587491630.007580132856245350.409460168042342
60.1501720272456970.01370135515865140.8035130119613750.0326136056342759
70.004558681163795310.1943781643900010.7947407299055780.00632242454062528
80.04784335083735830.9422692286929230.005917605999257750.00396981447046127
90.01008876301528230.002583988751103730.9461093957332240.0412178525003898
100.01227641283740670.8653734895801840.1179353534883990.00441474409401017
110.04591184143315940.7792196437054530.006935416557777820.16793309830361
120.7819650723282590.01162271340532220.1131193535017020.0932928607647172
130.6129682744875410.1721644797488710.09606105392373650.118806191839851
140.3572043034606330.2069966374512010.2224564023379920.213342656750174
150.2920591875284680.2611010521114410.2796737418503980.167166018509692
160.1646671445855060.1732270222912540.3718823488346860.290223484288554
170.1577649106411770.2788924324860160.3331187167262860.230223940146521

Sub Motif Members