NonredundantMotifs:11: Difference between revisions
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|entrez_gene_id=5468,6256
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HNF4A_NR2F1,2.p2~RXRG_dimer.p3 /HOMER:NR2C2_Hela-TR4-ChIP-Seq~HNF4A_HepG2-HN...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=5468,6256 | |entrez_gene_id=5468,6256 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0115.1;NR1H2::RXRA~MA0017.1;NR2F1~MA0065.2;PPARG::RXRA~MA0114.1;HNF4A /HOCOMOCO:PPARG_f1~RXRA_f1~COT2_f2~HNF4G_f1~HNF4A_f1~RXRG_f1~COT1_f1~NR1H2_f1~PPARA_f2~PPARD_f1~NR2C2_f1~NR2F6_f1 /SWISSREGULON:HNF4A_NR2F1,2.p2~RXRG_dimer.p3 /HOMER:NR2C2_Hela-TR4-ChIP-Seq~HNF4A_HepG2-HNF4a-ChIP-Seq~PPARG_3T3L1-Pparg-ChIP-Seq~RXRA,RXRB,RXRG_3T3L1-RXR-ChIP-Seq /UNIPROBE:Hnf4a_secondary;SCI09 | ||
|name=known11 | |name=known11 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known11
- db :JASPAR
- Id :MA0065.2
- name :PPARG::RXRA
- score :0.40344014069097944
- External refs:
- Internal refs:
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Sub Motif Members
