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Revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant116
  • db :SWISSREGULON
  • Id :CDC5L.p2
  • name :CDC5L
  • score :0.04744553038122821
  • External refs:
EntrezGene:CDC5L
UniProt:CDC5L

  • Internal refs:
EntrezGene:CDC5L


Motif matrix
POACGT
117.81189223.718126235.5736720.216234
2189.547320.42722523.35945663.985941
328.0642177.05242265.435993196.76729
412.3867866.52104212.166767266.245327
528.455564.5365923.368424260.959346
6285.7854544.3143713.0713824.148715
7257.1713515.9351745.18520219.028196
856.399198122.1264127.639521111.154791
9209.1088517.71491949.14944131.346711
1027.86444838.6550926.287882224.5125
11240.2154114.12554335.2579747.720995
12210.108136.22861250.97028130.012899

Sub Motif Members