Personal tools

NonredundantMotifs:117: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|entrez_gene_id=51043
|entrez_gene_id=51043
|motif_cluster_2013_march_motif_members= /HOCOMOCO:SP4_f1~ZBT7B_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:SP4_f1~ZBT7B_si
|name=known117
|name=non-redundant117
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=ZBT7B_si
|representative_motif_id=ZBT7B_si
Line 12: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant117
  • db :HOCOMOCO
  • Id :ZBT7B_si
  • name  :
  • score :4.964019475491405
  • External refs:
EntrezGene:51043
UniProt:51043

  • Internal refs:
EntrezGene:51043


Motif matrix
P0ACGT
12.644886363636377.4971590909090953.36079545454545240.4971590909090904
20.02.8636363636363711.1363636363636440.0
32.1477272727272740.71590909090909048.2727272727272752.86363636363637
44.6931818181818224.2954545454545484.2954545454545480.7159090909090904
50.04.2954545454545489.7045454545454510.0
65.4090909090909052.1477272727272744.2954545454545482.147727272727274
74.2954545454545480.71590909090909047.5568181818181771.431818181818178
80.02.14772727272727410.4204545454545491.431818181818178
90.00.014.00.0
101.4318181818181780.012.5681818181818220.0
110.00.014.00.0
126.8409090909090955.7272727272727260.71590909090909040.7159090909090904
132.1477272727272741.43181818181817810.4204545454545490.0
140.04.8522727272727269.1477272727272750.0
154.8522727272727261.27272727272727257.8750.0
160.04.2954545454545489.7045454545454510.0
170.01.4318181818181789.7045454545454512.86363636363637
182.70454545454545243.42045454545454767.1590909090909050.7159090909090904
192.1477272727272742.70454545454545249.1477272727272750.0
200.00.013.2840909090909190.7159090909090904
210.01.988636363636379.1477272727272752.86363636363637
223.42045454545454765.5681818181818222.1477272727272742.86363636363637

Sub Motif Members