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(Created page with "{{Known_motif |entrez_gene_id=64321 |motif_cluster_2013_march_motif_members= /HOCOMOCO:SOX17_f2 /UNIPROBE:Hbp1_secondary;SCI09 |name=known130 |representative_motif_db=HO...")
 
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{{Known_motif
 
{{Known_motif
 +
|PWM=P0;A;C;G;T!1;8.82375823519874;16.068801803576342;23.21044089250086;8.927213316205659!2;4.864665877248926;11.79934420260573;40.36620416762694;0.0!3;57.0302142474816;0.0;0.0;0.0!4;0.0;57.0302142474816;0.0;0.0!5;57.0302142474816;0.0;0.0;0.0!6;57.0302142474816;0.0;0.0;0.0!7;0.0;0.0;0.0;57.0302142474816!8;10.867843661112556;1.9665573671009586;40.26269848506618;3.933114734201912!9;21.632131038110522;0.0;20.70063049661735;14.697452712753732!10;18.734073129516414;5.899672101302865;17.699016303908593;14.697452712753732!11;12.730895345652739;15.732458936807657;16.76751576241542;11.79934420260573!12;36.43308943342501;5.899672101302865;0.0;14.697452712753732!13;11.79934420260573;3.00161419270875;0.0;42.229255852167114!14;0.0;0.0;8.797780611450866;48.23243363603079!15;0.0;0.0;35.39808320937108;21.632131038110522!16;1.9665573671009586;0.0;17.699016303908593;37.36464057647202!17;0.0;2.8981085101479676;8.90128629401162;45.230819443322034!18;4.554186780731975;4.554186780731975;39.434539171083735;8.487301514933868
 
|entrez_gene_id=64321
 
|entrez_gene_id=64321
|motif_cluster_2013_march_motif_members= /HOCOMOCO:SOX17_f2 /UNIPROBE:Hbp1_secondary;SCI09
+
|motif_cluster_2013_march_motif_members= /UNIPROBE:Hbp1_secondary;SCI09 /HOCOMOCO:SOX17_f2
 
|name=known130
 
|name=known130
 
|representative_motif_db=HOCOMOCO
 
|representative_motif_db=HOCOMOCO

Revision as of 01:47, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known130
  • db :HOCOMOCO
  • Id :SOX17_f2
  • name :
  • score :0.04004651643343136
  • External refs:
EntrezGene:64321
UniProt:64321

  • Internal refs:
EntrezGene:64321


Motif matrix
P0ACGT
18.8237582351987416.06880180357634223.210440892500868.927213316205659
24.86466587724892611.7993442026057340.366204167626940.0
357.03021424748160.00.00.0
40.057.03021424748160.00.0
557.03021424748160.00.00.0
657.03021424748160.00.00.0
70.00.00.057.0302142474816
810.8678436611125561.966557367100958640.262698485066183.933114734201912
921.6321310381105220.020.7006304966173514.697452712753732
1018.7340731295164145.89967210130286517.69901630390859314.697452712753732
1112.73089534565273915.73245893680765716.7675157624154211.79934420260573
1236.433089433425015.8996721013028650.014.697452712753732
1311.799344202605733.001614192708750.042.229255852167114
140.00.08.79778061145086648.23243363603079
150.00.035.3980832093710821.632131038110522
161.96655736710095860.017.69901630390859337.36464057647202
170.02.89810851014796768.9012862940116245.230819443322034
184.5541867807319754.55418678073197539.4345391710837358.487301514933868

Sub Motif Members