Personal tools

NonredundantMotifs:130

From FANTOM5_SSTAR

Revision as of 05:08, 30 April 2013 by Autoedit (talk | contribs) (Created page with "{{Known_motif |entrez_gene_id=64321 |motif_cluster_2013_march_motif_members= /HOCOMOCO:SOX17_f2 /UNIPROBE:Hbp1_secondary;SCI09 |name=known130 |representative_motif_db=HO...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known130
  • db :HOCOMOCO
  • Id :SOX17_f2
  • name :
  • score :0.04004651643343136
  • External refs:
EntrezGene:64321
UniProt:64321

  • Internal refs:
EntrezGene:64321


Motif matrix
{{{PWM}}}

Sub Motif Members