Personal tools

NonredundantMotifs:137: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Known_motif |entrez_gene_id=3663 |motif_cluster_2013_march_motif_members= /HOCOMOCO:IRF5_f1 |name=known137 |representative_motif_db=HOCOMOCO |representative_motif_id=I...")
 
m (Autoedit moved page NonredundantMotifs:Motif137 to NonredundantMotifs:137 without leaving a redirect: NSchange)
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.8888888888888901;0.0;1.88888888888889;2.2222222222222197!2;3.88888888888889;0.0;1.1111111111111098;0.0!3;5.0;0.0;0.0;0.0!4;5.0;0.0;0.0;0.0!5;0.0;0.0;4.111111111111115;0.8888888888888901!6;0.8888888888888901;0.0;4.111111111111115;0.0!7;3.11111111111111;0.0;1.88888888888889;0.0!8;5.0;0.0;0.0;0.0!9;5.0;0.0;0.0;0.0!10;1.88888888888889;0.0;3.11111111111111;0.0!11;0.0;5.0;0.0;0.0!12;1.1111111111111098;2.11111111111111;0.8888888888888901;0.8888888888888901!13;4.0;0.0;1.0;0.0!14;5.0;0.0;0.0;0.0!15;5.0;0.0;0.0;0.0!16;3.22222222222222;0.0;0.0;1.7777777777777801!17;0.0;2.11111111111111;2.8888888888888897;0.0!18;2.2222222222222197;0.0;0.0;2.7777777777777803!19;0.0;0.0;4.111111111111115;0.8888888888888901!20;3.444444444444445;1.1111111111111098;0.222222222222222;0.222222222222222
|entrez_gene_id=3663
|entrez_gene_id=3663
|motif_cluster_2013_march_motif_members= /HOCOMOCO:IRF5_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:IRF5_f1
|name=known137
|name=non-redundant137
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=IRF5_f1
|representative_motif_id=IRF5_f1
Line 11: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant137
  • db :HOCOMOCO
  • Id :IRF5_f1
  • name  :
  • score :0.11620521507921608
  • External refs:
EntrezGene:3663
UniProt:3663

  • Internal refs:
EntrezGene:3663


Motif matrix
P0ACGT
10.88888888888889010.01.888888888888892.2222222222222197
23.888888888888890.01.11111111111110980.0
35.00.00.00.0
45.00.00.00.0
50.00.04.1111111111111150.8888888888888901
60.88888888888889010.04.1111111111111150.0
73.111111111111110.01.888888888888890.0
85.00.00.00.0
95.00.00.00.0
101.888888888888890.03.111111111111110.0
110.05.00.00.0
121.11111111111110982.111111111111110.88888888888889010.8888888888888901
134.00.01.00.0
145.00.00.00.0
155.00.00.00.0
163.222222222222220.00.01.7777777777777801
170.02.111111111111112.88888888888888970.0
182.22222222222221970.00.02.7777777777777803
190.00.04.1111111111111150.8888888888888901
203.4444444444444451.11111111111110980.2222222222222220.222222222222222

Sub Motif Members