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NonredundantMotifs:154: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;1.4210526315789451;0.4736842105263156;1.4210526315789451;5.684210526315789!2;3.0789473684210553;1.894736842105266;4.0263157894736885;0.0!3;1.184210526315789;4.736842105263156;3.0789473684210553;0.0!4;5.684210526315789;3.3157894736842106;0.0;0.0!5;1.894736842105266;1.184210526315789;4.0263157894736885;1.894736842105266!6;0.0;0.0;8.052631578947368;0.947368421052633!7;0.947368421052633;0.0;0.947368421052633;7.105263157894734!8;0.0;0.0;0.0;9.0!9;2.842105263157899;0.947368421052633;4.0263157894736885;1.184210526315789!10;4.736842105263156;0.0;1.184210526315789;3.0789473684210553
|entrez_gene_id=4605
|entrez_gene_id=4605
|motif_cluster_2013_march_motif_members= /HOCOMOCO:MYBB_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:MYBB_f1

Revision as of 10:48, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known154
  • db :HOCOMOCO
  • Id :MYBB_f1
  • name  :
  • score :0.017102562649378445
  • External refs:
EntrezGene:4605
UniProt:4605

  • Internal refs:
EntrezGene:4605


Motif matrix
P0ACGT
11.42105263157894510.47368421052631561.42105263157894515.684210526315789
23.07894736842105531.8947368421052664.02631578947368850.0
31.1842105263157894.7368421052631563.07894736842105530.0
45.6842105263157893.31578947368421060.00.0
51.8947368421052661.1842105263157894.02631578947368851.894736842105266
60.00.08.0526315789473680.947368421052633
70.9473684210526330.00.9473684210526337.105263157894734
80.00.00.09.0
92.8421052631578990.9473684210526334.02631578947368851.184210526315789
104.7368421052631560.01.1842105263157893.0789473684210553

Sub Motif Members