Personal tools

NonredundantMotifs:154

From FANTOM5_SSTAR

Revision as of 01:22, 30 May 2013 by Autoedit (talk | contribs) (Autoedit moved page NonredundantMotifs:Motif154 to NonredundantMotifs:154 without leaving a redirect: NSchange)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant154
  • db :HOCOMOCO
  • Id :MYBB_f1
  • name :
  • score :0.017102562649378445
  • External refs:
EntrezGene:4605
UniProt:4605

  • Internal refs:
EntrezGene:4605


Motif matrix
P0ACGT
11.42105263157894510.47368421052631561.42105263157894515.684210526315789
23.07894736842105531.8947368421052664.02631578947368850.0
31.1842105263157894.7368421052631563.07894736842105530.0
45.6842105263157893.31578947368421060.00.0
51.8947368421052661.1842105263157894.02631578947368851.894736842105266
60.00.08.0526315789473680.947368421052633
70.9473684210526330.00.9473684210526337.105263157894734
80.00.00.09.0
92.8421052631578990.9473684210526334.02631578947368851.184210526315789
104.7368421052631560.01.1842105263157893.0789473684210553

Sub Motif Members