Personal tools

Difference between revisions of "NonredundantMotifs:169"

From FANTOM5_SSTAR

Jump to: navigation, search
Line 3: Line 3:
 
|entrez_gene_id=-
 
|entrez_gene_id=-
 
|motif_cluster_2013_march_motif_members= /UNIPROBE:Zfp187_secondary;SCI09
 
|motif_cluster_2013_march_motif_members= /UNIPROBE:Zfp187_secondary;SCI09
|name=known169
+
|name=non-redundant169
 
|representative_motif_db=UNIPROBE
 
|representative_motif_db=UNIPROBE
 
|representative_motif_id=Zfp187_secondary
 
|representative_motif_id=Zfp187_secondary
Line 12: Line 12:
 
[[Category:Motif]]
 
[[Category:Motif]]
 
[[Category:MotifCluster2013March]]
 
[[Category:MotifCluster2013March]]
 +
[[Category:NonRedundantMotifCluster]]

Revision as of 07:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant169
  • db :UNIPROBE
  • Id :Zfp187_secondary
  • name :SCI09
  • score :0.5649088076261805
  • External refs:
EntrezGene:-
UniProt:-

  • Internal refs:
EntrezGene:-


Motif matrix
P0ACGT
10.1730630325367410.1696795900420480.4408363612937630.216421016127448
20.3532765297465720.179995868958360.249403068357520.217324532937548
30.3073372685850230.0380548106159790.6163800946848520.038227826114146
40.3166359350669950.5646699754570770.02373188553219880.0949622039437287
50.01548358037895680.9237639667447440.01943946616737010.0413129867089293
60.01124273693075010.9562999370293940.009442871725783530.0230144543140719
70.06227307211812360.1075312604337390.01073927628698370.819456391161154
80.1266702271290530.2015214308090570.1920054815519790.479802860509911
90.09309014183863280.0459239351717040.8357919063546880.0251940166349748
100.02016469219402550.01548300723513250.009566605716651130.954785694854191
110.01087259573358610.672447635086810.004558597667444190.312121171512159
120.01800198946694350.8468602388924390.01760473398935620.117533037651261
130.3357029807824440.4081702057995360.1040954516102450.152031361807775
140.1503079009222510.3622956120153290.06740846784139560.419988019221023
150.2864901427116590.2422105283851290.1765319121571670.294767416746044
160.2650222285687110.2496549779038820.2722191899760060.2131036035514

Sub Motif Members