Personal tools

NonredundantMotifs:180: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
m (Autoedit moved page MotifCluster2013March:Non redundant180 to NonredundantMotifs:Motif180 without leaving a redirect: NSchange)
No edit summary
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;0.470459;30.618276;1.549277;94.212023!2;46.664693;73.505154;1.833437;4.846751!3;0;5.575778;6.963839;114.310418!4;45.885934;2.674796;48.843714;29.445591!5;69.444167;15.412824;5.961488;36.031556!6;90.606405;0.528435;35.715195;0!7;116.679781;0.471931;9.698323;0!8;8.303826;1.656703;114.958237;1.931269!9;10.281217;8.952193;106.069707;1.546918!10;59.975441;4.657693;62.216901;0!11;27.210159;28.851283;69.822047;0.966546!12;2.249864;78.205061;41.855984;4.539126
|PWM=PO;A;C;G;T!1;0.470459;30.618276;1.549277;94.212023!2;46.664693;73.505154;1.833437;4.846751!3;0;5.575778;6.963839;114.310418!4;45.885934;2.674796;48.843714;29.445591!5;69.444167;15.412824;5.961488;36.031556!6;90.606405;0.528435;35.715195;0!7;116.679781;0.471931;9.698323;0!8;8.303826;1.656703;114.958237;1.931269!9;10.281217;8.952193;106.069707;1.546918!10;59.975441;4.657693;62.216901;0!11;27.210159;28.851283;69.822047;0.966546!12;2.249864;78.205061;41.855984;4.539126
|entrez_gene_id=GTF2A1,2
|entrez_gene_id=2957,2958
|motif_cluster_2013_march_motif_members= /SWISSREGULON:GTF2A1,2.p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:GTF2A1,2.p2
|name=non-redundant180
|name=non-redundant180

Latest revision as of 15:56, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant180
  • db :SWISSREGULON
  • Id :GTF2A1,2.p2
  • name :GTF2A1,2
  • score :0.0700258131500835
  • External refs:
EntrezGene:2957
UniProt:2957

EntrezGene:2958
UniProt:2958

  • Internal refs:
EntrezGene:2957

EntrezGene:2958


Motif matrix
POACGT
10.47045930.6182761.54927794.212023
246.66469373.5051541.8334374.846751
305.5757786.963839114.310418
445.8859342.67479648.84371429.445591
569.44416715.4128245.96148836.031556
690.6064050.52843535.7151950
7116.6797810.4719319.6983230
88.3038261.656703114.9582371.931269
910.2812178.952193106.0697071.546918
1059.9754414.65769362.2169010
1127.21015928.85128369.8220470.966546
122.24986478.20506141.8559844.539126

Sub Motif Members