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Revision as of 09:50, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant182
  • db :UNIPROBE
  • Id :Arid3a_secondary
  • name :SCI09
  • score :0.008032957655459234
  • External refs:
EntrezGene:1820
UniProt:1820

  • Internal refs:
EntrezGene:1820


Motif matrix
P0ACGT
10.308020130528530.2763466955892370.161614891976820.254018281905412
20.2486458967123150.3012610091561090.2199337214976430.230159372633933
30.2564123731389970.3429543744945950.2450715905635160.155561661802892
40.2727543084504740.3381983312601630.3285558315333470.0604915287560159
50.3739951375831180.1524836799323650.3888878724975680.0846333099869495
60.07291556557073790.1890561438291060.1589895452870810.579038745313075
70.8119641151454070.07144728493500390.1012630703162440.0153255296033448
80.04088791693176030.1728286291410790.1007705046383930.685512949288768
90.1785361473118140.5795075685965310.2090226065618060.0329336775298486
100.5023376952456450.07382563493193920.2526427532513260.171193916571089
110.3485044516657740.09702998579312850.2747470710745130.279718491466585
120.437866816783240.2109643490633450.2478042673568410.103364566796574
130.2484289051184180.08863989876580050.1770880444139080.485843151701874
140.2156449276321080.3209170892030960.1220755219952940.341362461169501
150.1982945882471060.09996616555200960.3348169904981210.366922255702764

Sub Motif Members