NonredundantMotifs:24: Difference between revisions
From FANTOM5_SSTAR
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|entrez_gene_id=6935
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EOMES.p2~TBX4,5.p2~T.p2 /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=6935 | |entrez_gene_id=6935 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EOMES.p2~TBX4,5.p2~T.p2 /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-Seq | |motif_cluster_2013_march_motif_members= /JASPAR:MA0009.1;T~MA0103.1;ZEB1 /HOCOMOCO:ZEB1_do~TBX5_si~TBX2_f1~TBX3_f1 /SWISSREGULON:EOMES.p2~TBX4,5.p2~T.p2 /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-Seq /UNIPROBE:Eomes_primary;SCI09~Eomes_secondary;SCI09~Six4_2860.1;CELL08 | ||
|name=known24 | |name=known24 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known24
- db :HOCOMOCO
- Id :ZEB1_do
- name :
- score :0.7911637297312275
- External refs:
- Internal refs:
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Sub Motif Members
