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NonredundantMotifs:24: Difference between revisions

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|PWM=P0;A;C;G;T!1;40.467066178768256;24.7332241345442;22.42384074067384;39.60849109769958!2;26.09851549555037;78.17706205290655;7.2894687497971535;15.667575853431968!3;126.46296958552556;0.7696525661604446;0.0;0.0!4;0.0;3.8474114400240524;121.16219566036528;2.2230150512966396!5;0.7696525661604446;0.0;126.46296958552556;0.0!6;1.5388794369318033;0.0;0.0;125.69374271475426!7;18.04194835192721;1.4537881805252826;106.9672330530731;0.7696525661604446
|PWM=P0;A;C;G;T!1;40.467066178768256;24.7332241345442;22.42384074067384;39.60849109769958!2;26.09851549555037;78.17706205290655;7.2894687497971535;15.667575853431968!3;126.46296958552556;0.7696525661604446;0.0;0.0!4;0.0;3.8474114400240524;121.16219566036528;2.2230150512966396!5;0.7696525661604446;0.0;126.46296958552556;0.0!6;1.5388794369318033;0.0;0.0;125.69374271475426!7;18.04194835192721;1.4537881805252826;106.9672330530731;0.7696525661604446
|entrez_gene_id=6935
|entrez_gene_id=6935
|motif_cluster_2013_march_motif_members= /JASPAR:MA0009.1;T~MA0103.1;ZEB1 /SWISSREGULON:EOMES.p2~TBX4,5.p2~T.p2 /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-Seq /UNIPROBE:Eomes_primary;SCI09~Eomes_secondary;SCI09~Six4_2860.1;CELL08 /HOCOMOCO:ZEB1_do~TBX5_si~TBX2_f1~TBX3_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TBX2_f1~TBX3_f1~ZEB1_do~TBX5_si /HOMER:TBX5_HL1-Tbx5.biotin-ChIP-Seq~EOMES_H9-Eomes-ChIP-Seq /JASPAR:MA0009.1;T~MA0103.1;ZEB1 /SWISSREGULON:TBX4,5.p2~T.p2~EOMES.p2 /UNIPROBE:Six4_2860.1;CELL08~Eomes_primary;SCI09~Eomes_secondary;SCI09
|name=known24
|name=non-redundant24
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=ZEB1_do
|representative_motif_id=ZEB1_do
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant24
  • db :HOCOMOCO
  • Id :ZEB1_do
  • name  :
  • score :0.7911637297312275
  • External refs:
EntrezGene:6935
UniProt:6935

  • Internal refs:
EntrezGene:6935


Motif matrix
P0ACGT
140.46706617876825624.733224134544222.4238407406738439.60849109769958
226.0985154955503778.177062052906557.289468749797153515.667575853431968
3126.462969585525560.76965256616044460.00.0
40.03.8474114400240524121.162195660365282.2230150512966396
50.76965256616044460.0126.462969585525560.0
61.53887943693180330.00.0125.69374271475426
718.041948351927211.4537881805252826106.96723305307310.7696525661604446

Sub Motif Members