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NonredundantMotifs:40

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Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant40
  • db :HOCOMOCO
  • Id :SMAD3_f1
  • name :
  • score :0.09834004578654876
  • External refs:
EntrezGene:4088
UniProt:4088

  • Internal refs:
EntrezGene:4088


Motif matrix
P0ACGT
113.17200674536254817.97301854974709231.63743676222601310.217537942664446
215.7571669477234788.8634064080944527.01686340640810541.36256323777408
30.98482293423271286.64755480607083263.397976391231091.969645868465433
40.00.07.13996627318719265.86003372681289
50.072.015177065767350.00.9848229342327128
63.4468802698145061.84654300168634670.984822934232712866.7217537942665
77.6323777403035880.060.566610455312044.801011804384492
87.50927487352445815.3878583473861632.0067453625633318.09612141652615
916.24957841483977840.1315345699831510.3406408094435036.278246205733565
107.13996627318719228.8060708263069711.94097807757168525.11298482293423

Sub Motif Members