Personal tools

NonredundantMotifs:41: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 2: Line 2:
|PWM=PO;A;C;G;T!1;926;257;50;381!2;1444;2;166;2!3;1404;47;161;2!4;2;1608;2;2!5;2;1608;2;2!6;1428;2;107;77!7;2;1608;2;2!8;1473;92;2;47!9;643;108;547;316!10;579;575;261;199
|PWM=PO;A;C;G;T!1;926;257;50;381!2;1444;2;166;2!3;1404;47;161;2!4;2;1608;2;2!5;2;1608;2;2!6;1428;2;107;77!7;2;1608;2;2!8;1473;92;2;47!9;643;108;547;316!10;579;575;261;199
|entrez_gene_id=861
|entrez_gene_id=861
|motif_cluster_2013_march_motif_members= /JASPAR:MA0002.2;RUNX1 /SWISSREGULON:RUNX1..3.p2 /HOMER:RUNX1_Jurkat-RUNX1-ChIP-Seq~RUNX1_HPC7-Runx1-ChIP-Seq~RUNX2_PCa-RUNX2-ChIP-Seq(GSE33889) /HOCOMOCO:RUNX1_f1~RUNX3_si~PEBB_f1~RUNX2_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:RUNX2_f1~RUNX1_f1~PEBB_f1~RUNX3_si /HOMER:RUNX1_HPC7-Runx1-ChIP-Seq~RUNX1_Jurkat-RUNX1-ChIP-Seq~RUNX2_PCa-RUNX2-ChIP-Seq(GSE33889) /JASPAR:MA0002.2;RUNX1 /SWISSREGULON:RUNX1..3.p2
|name=known41
|name=non-redundant41
|representative_motif_db=HOMER
|representative_motif_db=HOMER
|representative_motif_id=RUNX1_Jurkat-RUNX1-ChIP-Seq
|representative_motif_id=RUNX1_Jurkat-RUNX1-ChIP-Seq
Line 12: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant41
  • db :HOMER
  • Id :RUNX1_Jurkat-RUNX1-ChIP-Seq
  • name  :
  • score :0.526554319571298
  • External refs:
EntrezGene:861
UniProt:861

  • Internal refs:
EntrezGene:861


Motif matrix
POACGT
192625750381
2144421662
31404471612
42160822
52160822
61428210777
72160822
8147392247
9643108547316
10579575261199

Sub Motif Members