NonredundantMotifs:41: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;926;257;50;381!2;1444;2;166;2!3;1404;47;161;2!4;2;1608;2;2!5;2;1608;2;2!6;1428;2;107;77!7;2;1608;2;2!8;1473;92;2;47!9;643;108;547;316!10;579;575;261;199 | |||
|entrez_gene_id=861 | |entrez_gene_id=861 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:RUNX2_f1~RUNX1_f1~PEBB_f1~RUNX3_si /HOMER:RUNX1_HPC7-Runx1-ChIP-Seq~RUNX1_Jurkat-RUNX1-ChIP-Seq~RUNX2_PCa-RUNX2-ChIP-Seq(GSE33889) /JASPAR:MA0002.2;RUNX1 /SWISSREGULON:RUNX1..3.p2 | ||
|name= | |name=non-redundant41 | ||
|representative_motif_db=HOMER | |representative_motif_db=HOMER | ||
|representative_motif_id=RUNX1_Jurkat-RUNX1-ChIP-Seq | |representative_motif_id=RUNX1_Jurkat-RUNX1-ChIP-Seq | ||
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[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant41
- db :HOMER
- Id :RUNX1_Jurkat-RUNX1-ChIP-Seq
- name :
- score :0.526554319571298
- External refs:
- Internal refs:
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Sub Motif Members
