NonredundantMotifs:60: Difference between revisions
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|entrez_gene_id=56987
|motif_cluster_2013_march_motif_members= /HOCOMOCO:LHX2_f1~HBP1_f1 /UNIPROBE:Hbp1_primary;SCI09~Sox1_primary;SCI09~Bbx_primary;SCI09
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.243560873779728;0.194936424040099;0.123150164526517;0.438352537653656!2;0.606538176187487;0.159877538988805;0.0564757758785554;0.177108508945152!3;0.460255875416143;0.141315149263762;0.21523669767678;0.183192277643315!4;0.134433946276435;0.0335083587576954;0.0533043312114166;0.778753363754453!5;0.0913329656210277;0.0199660749055727;0.02070421097705;0.86799674849635!6;0.136283897033399;0.75357132294826;0.0625595514301641;0.0475852285881772!7;0.917109030788599;0.0314752088291793;0.0154716083484512;0.0359441520337709!8;0.45224393408727;0.0848898746039908;0.121698049569224;0.341168141739516!9;0.0359441520337709;0.0154716083484512;0.0314752088291793;0.917109030788599!10;0.0475852285881772;0.0625595514301641;0.75357132294826;0.136283897033399!11;0.86799674849635;0.02070421097705;0.0199660749055727;0.0913329656210277!12;0.778753363754453;0.0533043312114166;0.0335083587576954;0.134433946276435!13;0.123705118684704;0.284125306656146;0.35336127856272;0.23880829609643!14;0.291281741118567;0.126574394207746;0.120737413447174;0.461406451226514!15;0.33062606243941;0.0625648081539657;0.348868388592034;0.25794074081459 | |||
|entrez_gene_id=56987 | |entrez_gene_id=56987 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /UNIPROBE:Hbp1_primary;SCI09~Sox1_primary;SCI09~Bbx_primary;SCI09 /HOCOMOCO:LHX2_f1~HBP1_f1 | ||
|name=known60 | |name=known60 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known60
- db :UNIPROBE
- Id :Bbx_primary
- name :SCI09
- score :0.07688020615335647
- External refs:
- Internal refs:
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Sub Motif Members
