Personal tools

NonredundantMotifs:64: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Known_motif |entrez_gene_id=6928 |motif_cluster_2013_march_motif_members= /SWISSREGULON:HNF1A.p2 /JASPAR:MA0153.1;HNF1B~MA0046.1;HNF1A /HOCOMOCO:HNF1B_f1~HNF1A_f1 |nam...")
 
No edit summary
Line 1: Line 1:
{{Known_motif
{{Known_motif
|entrez_gene_id=6928
|entrez_gene_id=6928
|motif_cluster_2013_march_motif_members= /SWISSREGULON:HNF1A.p2 /JASPAR:MA0153.1;HNF1B~MA0046.1;HNF1A /HOCOMOCO:HNF1B_f1~HNF1A_f1
|motif_cluster_2013_march_motif_members= /JASPAR:MA0153.1;HNF1B~MA0046.1;HNF1A /HOCOMOCO:HNF1B_f1~HNF1A_f1 /SWISSREGULON:HNF1A.p2
|name=known64
|name=known64
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 16:20, 1 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known64
  • db :HOCOMOCO
  • Id :HNF1B_f1
  • name  :
  • score :0.19904791015216042
  • External refs:
EntrezGene:6928
UniProt:6928

  • Internal refs:
EntrezGene:6928


Motif matrix
{{{PWM}}}

Sub Motif Members