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NonredundantMotifs:67: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;49.636582;188.331903;15.653514;65.913674!2;182.44103;5.232991;115.211513;16.650139!3;7.337097;152.958876;94.4080779999999;64.831622!4;30.046149;234.720516;9.86091;44.908098!5;44.443345;52.432663;33.42907;189.230595!6;10.977514;105.461445;155.778334;47.31838!7;9.831132;83.061223;29.277186;197.366132!8;8.936186;88.680118;81.012872;140.906497!9;17.504556;158.862486;62.177035;80.991596!10;78.182046;85.4894369999999;59.257764;96.606426!11;60.938647;79.430435;100.631992;78.5345989999999!12;47.020353;42.565187;66.578624;163.371509!13;8.992938;121.972905;12.342448;176.227382!14;12.196962;13.649225;47.03758;246.651906!15;11.148649;1.681438;261.7799;44.925686!16;7.063101;20.106863;287.945606;4.420103!17;39.772017;206.298665;22.331128;51.133863!18;157.571746;30.761384;77.413063;53.78948!19;39.591222;165.350128;69.789597;44.804726!20;14.667034;105.169377;116.310559;83.3887029999999!21;16.137777;134.425176;120.375801;48.596919!22;81.0205269999999;49.839038;66.225921;122.450187!23;12.225561;72.6054409999999;222.152379;12.552292!24;8.541623;266.343039;19.712826;24.938185!25;35.913149;251.939662;12.449359;19.233503!26;169.542509;36.967714;44.471721;68.553729!27;113.720548;12.885882;156.635014;36.294229!28;44.486897;161.960429;62.076499;51.011848!29;80.2461149999999;93.87162;28.368203;117.049735
|PWM=P0;A;C;G;T!1;33.86721125369617;49.8441744727729;25.19463142453828;124.09398284899267!2;7.810959795993017;7.100872541811832;16.129124773544007;201.95904288865188!3;10.65130881271776;2.028820726231953;204.5965098327535;15.723360628297629!4;15.317596483051227;6.897990469188642;199.22013490823866;11.564278139522134!5;25.86746425945732;167.87485468795472;26.78043358626172;12.477247466326508!6;96.74310062734916;58.25062877548366;28.5296626871532;49.47660791001422!7;50.05989386880585;76.27988665341896;48.2333264397134;58.42689303806155!8;85.63062638443886;0.4226709846316574;146.69310004015108;0.2536025907789935!9;53.66042188238378;50.820072865659036;80.23545829408754;48.28404695786917!10;70.49963391010914;30.481773860667538;23.686481978758106;108.33211025046546!11;17.57465954098429;16.154485032621917;171.60281277240597;27.66804265398823!12;13.897421974688879;189.27891334970207;14.658229747025862;15.165434928583835!13;13.288775756819287;195.46681656470952;13.390216793130882;10.854190885340948!14;181.5186740718647;14.91183233780485;16.382727364323017;20.186766226007933!15;102.67865880254483;20.921584963783275;82.69603220012739;26.7037240335444
|entrez_gene_id=NFIX
|entrez_gene_id=4774,4781,4782,4784
|motif_cluster_2013_march_motif_members= /JASPAR:MA0119.1;TLX1::NFIC /SWISSREGULON:TLX1..3_NFIC(dimer).p2~NFIX.p2 /HOMER:NFIC_LNCAP-NF1-ChIP-Seq /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_f2
|motif_cluster_2013_march_motif_members= /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_f2 /HOMER:NFIC_LNCAP-NF1-ChIP-Seq /JASPAR:MA0119.1;TLX1::NFIC /SWISSREGULON:TLX1..3_NFIC(dimer).p2~NFIX.p2
|name=known67
|name=non-redundant67
|representative_motif_db=SWISSREGULON
|representative_motif_db=HOCOMOCO
|representative_motif_id=NFIX.p2
|representative_motif_id=NFIA+NFIB+NFIC+NFIX_f2
|representative_motif_name=NFIX
|representative_motif_name=  
|score=3.539803224280569
|score=0.40395829448506826
|uniprot_entry_name=NFIX
|uniprot_entry_name=NFIA_HUMAN,NFIB_HUMAN,NFIC_HUMAN,NFIX_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant67
  • db :HOCOMOCO
  • Id :NFIA+NFIB+NFIC+NFIX_f2
  • name  :
  • score :0.40395829448506826
  • External refs:
EntrezGene:4774
UniProt:4774

EntrezGene:4781
UniProt:4781

EntrezGene:4782
UniProt:4782

EntrezGene:4784
UniProt:4784

  • Internal refs:
EntrezGene:4774

EntrezGene:4781

EntrezGene:4782

EntrezGene:4784


Motif matrix
P0ACGT
133.8672112536961749.844174472772925.19463142453828124.09398284899267
27.8109597959930177.10087254181183216.129124773544007201.95904288865188
310.651308812717762.028820726231953204.596509832753515.723360628297629
415.3175964830512276.897990469188642199.2201349082386611.564278139522134
525.86746425945732167.8748546879547226.7804335862617212.477247466326508
696.7431006273491658.2506287754836628.529662687153249.47660791001422
750.0598938688058576.2798866534189648.233326439713458.42689303806155
885.630626384438860.4226709846316574146.693100040151080.2536025907789935
953.6604218823837850.82007286565903680.2354582940875448.28404695786917
1070.4996339101091430.48177386066753823.686481978758106108.33211025046546
1117.5746595409842916.154485032621917171.6028127724059727.66804265398823
1213.897421974688879189.2789133497020714.65822974702586215.165434928583835
1313.288775756819287195.4668165647095213.39021679313088210.854190885340948
14181.518674071864714.9118323378048516.38272736432301720.186766226007933
15102.6786588025448320.92158496378327582.6960322001273926.7037240335444

Sub Motif Members

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