NonredundantMotifs:70: Difference between revisions
From FANTOM5_SSTAR
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|motif_cluster_2013_march_motif_members= /SWISSREGULON:EBF1.p2 /HOMER:EBF1_proBcell-EBF-ChIP-Seq /JASPAR:MA0154.1;EBF1 /HOCOMOCO:COE1_f2
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;182.51539556040018;543.2421476854983;576.8183564021358;502.6258187099166!2;70.91794422713683;373.4261075689057;129.46480076197;1231.3928657999181!3;1.542392180448046;1799.9395140889035;3.181057981849563;0.5387541067148484!4;7.884337885558359;1608.0456751580589;13.21034723255858;176.06135808174844!5;2.0586404385669415;1726.111926972793;1.519886331852093;75.51126461470419!6;381.04976020900915;4.687835209743753;88.49324853638379;1330.9708744027962!7;130.02029332310875;15.628074336756631;1248.177620521275;411.3757301767931!8;106.91041166772227;35.50028667114703;1661.1998740677757;1.5911459512727935!9;433.25227678564084;0.0;1324.0001543887654;47.94928718352115!10;0.49459538704543676;0.48486305479510394;1804.2222599160752;0.0!11;966.4226399737722;145.61719231821368;441.29490103797434;251.86698502797753!12;421.51671610287826;737.2106387585017;467.2942005535073;179.1801629430596 | ||
|motif_cluster_2013_march_motif_members= / | |entrez_gene_id=1879 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:COE1_f2 /HOMER:EBF1_proBcell-EBF-ChIP-Seq /JASPAR:MA0154.1;EBF1 /SWISSREGULON:EBF1.p2 | ||
|representative_motif_db= | |name=non-redundant70 | ||
|representative_motif_id= | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=COE1_f2 | |||
|representative_motif_name= | |representative_motif_name= | ||
|score=0. | |score=0.3722945507074686 | ||
|uniprot_entry_name= | |uniprot_entry_name=COE1_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant70
- db :HOCOMOCO
- Id :COE1_f2
- name :
- score :0.3722945507074686
- External refs:
- Internal refs:
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Sub Motif Members
