Difference between revisions of "NonredundantMotifs:70"
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:EBF1.p2 /HOMER:EBF1_proBcell-EBF-ChIP-Seq /JASPAR:MA0154.1;EBF1 /HOCOMOCO:COE1_f2
...") |
|||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |entrez_gene_id= | ||
| − | |motif_cluster_2013_march_motif_members= /SWISSREGULON:EBF1.p2 /HOMER:EBF1_proBcell-EBF-ChIP- | + | |motif_cluster_2013_march_motif_members= /JASPAR:MA0154.1;EBF1 /HOCOMOCO:COE1_f2 /SWISSREGULON:EBF1.p2 /HOMER:EBF1_proBcell-EBF-ChIP-Seq |
|name=known70 | |name=known70 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 07:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known70
- db :SWISSREGULON
- Id :EBF1.p2
- name :
- score :0.893570516768295
- External refs:
- Internal refs:
| Motif matrix | |
|---|---|
|
Sub Motif Members
