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NonredundantMotifs:87: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.2752071165809;0.211374939882425;0.250276687437895;0.26314125609878!2;0.135064246282642;0.327571435857793;0.217556292614213;0.319808025245352!3;0.145658589169038;0.242586431078853;0.267178691961949;0.34457628779016!4;0.656519056903772;0.00971214347213005;0.315173854411255;0.0185949452128421!5;0.00226499308241757;0.00475485402566559;0.0016556488560358;0.991324504035881!6;0.0418733705985873;0.00112759896285182;0.955340373987385;0.00165865645117629!7;0.00130551060523905;0.974833528206637;0.0222154754500661;0.00164548573805761!8;0.00197831970448536;0.992066032057098;0.0026384902368037;0.00331715800161292!9;0.921031777705037;0.0723878828148734;0.00123659740789628;0.00534374207219352!10;0.582027364900139;0.211693940233752;0.115736288088923;0.0905424067771862!11;0.00599025897564052;0.927449539126281;0.0283062416107432;0.0382539602873358!12;0.0273740339749871;0.799878575295505;0.0536672800126871;0.119080110716821!13;0.203510085856749;0.191263215579811;0.168997220892226;0.436229477671214!14;0.402252699547531;0.154087334035405;0.291345833237507;0.152314133179557!15;0.20120126991122;0.414412456297076;0.145329799984595;0.239056473807109!16;0.241094098919118;0.332661254970953;0.143464019251261;0.282780626858668
|PWM=P0;A;C;G;T!1;66.07893715391491;104.60866309647001;42.55557940401112;51.756820345603956!2;15.362627600154255;45.543123976791335;2.3556028986903192;201.73864552436441!3;1.9459328293528724;0.7169226213405314;13.92878235747319;248.4083621918338!4;3.482195589368311;0.0;255.2703358532359;6.247468557396064!5;7.6813138000771275;3.379778072033938;253.4268205412176;0.5120875866718093!6;14.031199874807564;234.63320611036193;12.392519597457754;3.9430744173729364!7;118.27323385135733;33.34617065316858;37.25657383354188;76.12402166193222
|entrez_gene_id=3090
|entrez_gene_id=4774,4781,4782,4784
|motif_cluster_2013_march_motif_members= /JASPAR:MA0161.1;NFIC /UNIPROBE:Hic1_primary;SCI09 /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:NFIA+NFIB+NFIC+NFIX_si /JASPAR:MA0161.1;NFIC /UNIPROBE:Hic1_primary;SCI09
|name=known87
|name=non-redundant87
|representative_motif_db=UNIPROBE
|representative_motif_db=HOCOMOCO
|representative_motif_id=Hic1_primary
|representative_motif_id=NFIA+NFIB+NFIC+NFIX_si
|representative_motif_name=SCI09
|representative_motif_name=  
|score=0.07041977963654947
|score=0.04531406897134382
|uniprot_entry_name=HIC1_HUMAN
|uniprot_entry_name=NFIA_HUMAN,NFIB_HUMAN,NFIC_HUMAN,NFIX_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant87
  • db :HOCOMOCO
  • Id :NFIA+NFIB+NFIC+NFIX_si
  • name  :
  • score :0.04531406897134382
  • External refs:
EntrezGene:4774
UniProt:4774

EntrezGene:4781
UniProt:4781

EntrezGene:4782
UniProt:4782

EntrezGene:4784
UniProt:4784

  • Internal refs:
EntrezGene:4774

EntrezGene:4781

EntrezGene:4782

EntrezGene:4784


Motif matrix
P0ACGT
166.07893715391491104.6086630964700142.5555794040111251.756820345603956
215.36262760015425545.5431239767913352.3556028986903192201.73864552436441
31.94593282935287240.716922621340531413.92878235747319248.4083621918338
43.4821955893683110.0255.27033585323596.247468557396064
57.68131380007712753.379778072033938253.42682054121760.5120875866718093
614.031199874807564234.6332061103619312.3925195974577543.9430744173729364
7118.2732338513573333.3461706531685837.2565738335418876.12402166193222

Sub Motif Members

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