| 110962 | Mbd6 | methyl-CpG binding domain protein 6 |
| 114142 | Foxp2 | forkhead box P2 |
| 114565 | Zfp295 | zinc finger protein 295 |
| 114604 | Prdm15 | PR domain containing 15 |
| 114712 | Ferd3l | Fer3-like (Drosophila) |
| 114774 | Pawr | PRKC, apoptosis, WT1, regulator |
| 114889 | Vsx1 | visual system homeobox 1 homolog (zebrafish) |
| 11538 | Adnp | activity-dependent neuroprotective protein |
| 11545 | Parp1 | poly (ADP-ribose) polymerase family, member 1 |
| 11568 | Aebp1 | AE binding protein 1 |
| 11569 | Aebp2 | AE binding protein 2 |
| 11614 | Nr0b1 | nuclear receptor subfamily 0, group B, member 1 |
| 11622 | Ahr | aryl-hydrocarbon receptor |
| 11634 | Aire | autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy) |
| 116810 | Foxn4 | forkhead box N4 |
| 116870 | Mta1 | metastasis associated 1 |
| 116871 | Mta3 | metastasis associated 3 |
| 11694 | Alx3 | aristaless-like homeobox 3 |
| 11695 | Alx4 | aristaless-like homeobox 4 |
| 11819 | Nr2f2 | nuclear receptor subfamily 2, group F, member 2 |
| 11835 | Ar | androgen receptor |
| 118445 | Klf16 | Kruppel-like factor 16 |
| 11859 | Phox2a | paired-like homeobox 2a |
| 11863 | Arnt | aryl hydrocarbon receptor nuclear translocator |
| 11864 | Arnt2 | aryl hydrocarbon receptor nuclear translocator 2 |
| 11865 | Arntl | aryl hydrocarbon receptor nuclear translocator-like |
| 11878 | Arx | aristaless related homeobox |
| 11906 | Zfhx3 | zinc finger homeobox 3 |
| 11908 | Atf1 | activating transcription factor 1 |
| 11909 | Atf2 | activating transcription factor 2 |
| 11910 | Atf3 | activating transcription factor 3 |
| 11911 | Atf4 | activating transcription factor 4 |
| 11921 | Atoh1 | atonal homolog 1 (Drosophila) |
| 11922 | Neurod6 | neurogenic differentiation 6 |
| 11923 | Neurod4 | neurogenic differentiation 4 |
| 11924 | Neurog2 | neurogenin 2 |
| 11925 | Neurog3 | neurogenin 3 |
| 12013 | Bach1 | BTB and CNC homology 1 |
| 12014 | Bach2 | BTB and CNC homology 2 |
| 12020 | Nkx3-2 | NK3 homeobox 2 |
| 12022 | Barx1 | BarH-like homeobox 1 |
| 12023 | Barx2 | BarH-like homeobox 2 |
| 12029 | Bcl6b | B-cell CLL/lymphoma 6, member B |
| 12034 | Phb2 | prohibitin 2 |
| 12051 | Bcl3 | B-cell leukemia/lymphoma 3 |
| 12053 | Bcl6 | B-cell leukemia/lymphoma 6 |
| 12142 | Prdm1 | PR domain containing 1, with ZNF domain |
| 12156 | Bmp2 | bone morphogenetic protein 2 |
| 12173 | Bnc1 | basonuclin 1 |
| 12189 | Brca1 | breast cancer 1 |
| 12192 | Zfp36l1 | zinc finger protein 36, C3H type-like 1 |
| 12193 | Zfp36l2 | zinc finger protein 36, C3H type-like 2 |
| 12224 | Klf5 | Kruppel-like factor 5 |
| 12355 | Nr1i3 | nuclear receptor subfamily 1, group I, member 3 |
| 12393 | Runx2 | runt related transcription factor 2 |
| 12394 | Runx1 | runt related transcription factor 1 |
| 12395 | Runx1t1 | runt-related transcription factor 1; translocated to, 1 (cyclin D-related) |
| 12399 | Runx3 | runt related transcription factor 3 |
| 12400 | Cbfb | core binding factor beta |
| 12590 | Cdx1 | caudal type homeobox 1 |
| 12591 | Cdx2 | caudal type homeobox 2 |
| 12606 | Cebpa | CCAAT/enhancer binding protein (C/EBP), alpha |
| 12607 | Cebpz | CCAAT/enhancer binding protein zeta |
| 12608 | Cebpb | CCAAT/enhancer binding protein (C/EBP), beta |
| 12609 | Cebpd | CCAAT/enhancer binding protein (C/EBP), delta |
| 12611 | Cebpg | CCAAT/enhancer binding protein (C/EBP), gamma |
| 12677 | Vsx2 | visual system homeobox 2 |
| 12753 | Clock | circadian locomotor output cycles kaput |
| 12912 | Creb1 | cAMP responsive element binding protein 1 |
| 12913 | Creb3 | cAMP responsive element binding protein 3 |
| 12914 | Crebbp | CREB binding protein |
| 12915 | Atf6b | activating transcription factor 6 beta |
| 12916 | Crem | cAMP responsive element modulator |
| 12951 | Crx | cone-rod homeobox containing gene |
| 13018 | Ctcf | CCCTC-binding factor |
| 13047 | Cux1 | cut-like homeobox 1 |
| 13048 | Cux2 | cut-like homeobox 2 |
| 13134 | Dach1 | dachshund 1 (Drosophila) |
| 13170 | Dbp | D site albumin promoter binding protein |
| 13172 | Dbx1 | developing brain homeobox 1 |
| 13198 | Ddit3 | DNA-damage inducible transcript 3 |
| 13345 | Twist2 | twist homolog 2 (Drosophila) |
| 13390 | Dlx1 | distal-less homeobox 1 |
| 13392 | Dlx2 | distal-less homeobox 2 |
| 13393 | Dlx3 | distal-less homeobox 3 |
| 13395 | Dlx5 | distal-less homeobox 5 |
| 13396 | Dlx6 | distal-less homeobox 6 |
| 13418 | Dnajc1 | DnaJ (Hsp40) homolog, subfamily C, member 1 |
| 13433 | Dnmt1 | DNA methyltransferase (cytosine-5) 1 |
| 13435 | Dnmt3a | DNA methyltransferase 3A |
| 13436 | Dnmt3b | DNA methyltransferase 3B |
| 13486 | Dr1 | down-regulator of transcription 1 |
| 13496 | Arid3a | AT rich interactive domain 3A (BRIGHT-like) |
| 13555 | E2f1 | E2F transcription factor 1 |
| 13557 | E2f3 | E2F transcription factor 3 |
| 13559 | E2f5 | E2F transcription factor 5 |
| 13560 | E4f1 | E4F transcription factor 1 |
| 13591 | Ebf1 | early B-cell factor 1 |
| 13592 | Ebf2 | early B-cell factor 2 |
| 13593 | Ebf3 | early B-cell factor 3 |
| 13653 | Egr1 | early growth response 1 |
| 13654 | Egr2 | early growth response 2 |
| 13655 | Egr3 | early growth response 3 |
| 13656 | Egr4 | early growth response 4 |
| 13661 | Ehf | ets homologous factor |
| 13709 | Elf1 | E74-like factor 1 |
| 13710 | Elf3 | E74-like factor 3 |
| 13711 | Elf5 | E74-like factor 5 |
| 13712 | Elk1 | ELK1, member of ETS oncogene family |
| 13713 | Elk3 | ELK3, member of ETS oncogene family |
| 13714 | Elk4 | ELK4, member of ETS oncogene family |
| 13796 | Emx1 | empty spiracles homolog 1 (Drosophila) |
| 13797 | Emx2 | empty spiracles homolog 2 (Drosophila) |
| 13798 | En1 | engrailed 1 |
| 13799 | En2 | engrailed 2 |
| 13806 | Eno1 | enolase 1, alpha non-neuron |
| 13813 | Eomes | eomesodermin homolog (Xenopus laevis) |
| 13819 | Epas1 | endothelial PAS domain protein 1 |
| 13864 | Nr2f6 | nuclear receptor subfamily 2, group F, member 6 |
| 13865 | Nr2f1 | nuclear receptor subfamily 2, group F, member 1 |
| 13875 | Erf | Ets2 repressor factor |
| 13876 | Erg | avian erythroblastosis virus E-26 (v-ets) oncogene related |
| 13982 | Esr1 | estrogen receptor 1 (alpha) |
| 13983 | Esr2 | estrogen receptor 2 (beta) |
| 13984 | Esx1 | extraembryonic, spermatogenesis, homeobox 1 |
| 13990 | Smarcad1 | SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 |
| 14008 | Etv2 | ets variant gene 2 |
| 14009 | Etv1 | ets variant gene 1 |
| 14011 | Etv6 | ets variant gene 6 (TEL oncogene) |
| 14013 | Mecom | MDS1 and EVI1 complex locus |
| 14025 | Bcl11a | B-cell CLL/lymphoma 11A (zinc finger protein) |
| 14029 | Evx2 | even skipped homeotic gene 2 homolog |
| 140477 | Dmbx1 | diencephalon/mesencephalon homeobox 1 |
| 140482 | Zfp358 | zinc finger protein 358 |
| 14055 | Ezh1 | enhancer of zeste homolog 1 (Drosophila) |
| 14056 | Ezh2 | enhancer of zeste homolog 2 (Drosophila) |
| 14106 | Foxh1 | forkhead box H1 |
| 14233 | Foxi1 | forkhead box I1 |
| 14234 | Foxc2 | forkhead box C2 |
| 14235 | Foxm1 | forkhead box M1 |
| 14236 | Foxn2 | forkhead box N2 |
| 14238 | Foxf2 | forkhead box F2 |
| 14239 | Foxs1 | forkhead box S1 |
| 14241 | Foxl1 | forkhead box L1 |
| 14247 | Fli1 | Friend leukemia integration 1 |
| 14266 | Aff2 | AF4/FMR2 family, member 2 |
| 14281 | Fos | FBJ osteosarcoma oncogene |
| 14282 | Fosb | FBJ osteosarcoma oncogene B |
| 14283 | Fosl1 | fos-like antigen 1 |
| 14284 | Fosl2 | fos-like antigen 2 |
| 14390 | Gabpa | GA repeat binding protein, alpha |
| 14391 | Gabpb1 | GA repeat binding protein, beta 1 |
| 14460 | Gata1 | GATA binding protein 1 |
| 14461 | Gata2 | GATA binding protein 2 |
| 14462 | Gata3 | GATA binding protein 3 |
| 14463 | Gata4 | GATA binding protein 4 |
| 14464 | Gata5 | GATA binding protein 5 |
| 14465 | Gata6 | GATA binding protein 6 |
| 14472 | Gbx2 | gastrulation brain homeobox 2 |
| 14531 | Gcm1 | glial cells missing homolog 1 (Drosophila) |
| 14536 | Nr6a1 | nuclear receptor subfamily 6, group A, member 1 |
| 14581 | Gfi1 | growth factor independent 1 |
| 14582 | Gfi1b | growth factor independent 1B |
| 14605 | Tsc22d3 | TSC22 domain family, member 3 |
| 14632 | Gli1 | GLI-Kruppel family member GLI1 |
| 14633 | Gli2 | GLI-Kruppel family member GLI2 |
| 14634 | Gli3 | GLI-Kruppel family member GLI3 |
| 14815 | Nr3c1 | nuclear receptor subfamily 3, group C, member 1 |
| 14836 | Gsc | goosecoid homeobox |
| 14842 | Gsx1 | GS homeobox 1 |
| 14843 | Gsx2 | GS homeobox 2 |
| 14886 | Gtf2i | general transcription factor II I |
| 14912 | Nkx6-2 | NK6 homeobox 2 |
| 15110 | Hand1 | heart and neural crest derivatives expressed transcript 1 |
| 15111 | Hand2 | heart and neural crest derivatives expressed transcript 2 |
| 15205 | Hes1 | hairy and enhancer of split 1 (Drosophila) |
| 15206 | Hes2 | hairy and enhancer of split 2 (Drosophila) |
| 15207 | Hes3 | hairy and enhancer of split 3 (Drosophila) |
| 15208 | Hes5 | hairy and enhancer of split 5 (Drosophila) |
| 15209 | Hesx1 | homeobox gene expressed in ES cells |
| 15213 | Hey1 | hairy/enhancer-of-split related with YRPW motif 1 |
| 15214 | Hey2 | hairy/enhancer-of-split related with YRPW motif 2 |
| 15218 | Foxn1 | forkhead box N1 |
| 15220 | Foxq1 | forkhead box Q1 |
| 15221 | Foxd3 | forkhead box D3 |
| 15223 | Foxj1 | forkhead box J1 |
| 15227 | Foxf1a | forkhead box F1a |
| 15228 | Foxg1 | forkhead box G1 |
| 15229 | Foxd1 | forkhead box D1 |
| 15242 | Hhex | hematopoietically expressed homeobox |
| 15248 | Hic1 | hypermethylated in cancer 1 |
| 15251 | Hif1a | hypoxia inducible factor 1, alpha subunit |
| 15273 | Hivep2 | human immunodeficiency virus type I enhancer binding protein 2 |
| 15278 | Tfb2m | transcription factor B2, mitochondrial |
| 15284 | Hlx | H2.0-like homeobox |
| 15285 | Mnx1 | motor neuron and pancreas homeobox 1 |
| 15353 | Hmg20b | high mobility group 20 B |
| 15361 | Hmga1 | high mobility group AT-hook 1 |
| 15364 | Hmga2 | high mobility group AT-hook 2 |
| 15370 | Nr4a1 | nuclear receptor subfamily 4, group A, member 1 |
| 15371 | Hmx1 | H6 homeobox 1 |
| 15372 | Hmx2 | H6 homeobox 2 |
| 15375 | Foxa1 | forkhead box A1 |
| 15376 | Foxa2 | forkhead box A2 |
| 15377 | Foxa3 | forkhead box A3 |
| 15378 | Hnf4a | hepatic nuclear factor 4, alpha |
| 15379 | Onecut1 | one cut domain, family member 1 |
| 15387 | Hnrnpk | heterogeneous nuclear ribonucleoprotein K |
| 15394 | Hoxa1 | homeobox A1 |
| 15395 | Hoxa10 | homeobox A10 |
| 15396 | Hoxa11 | homeobox A11 |
| 15398 | Hoxa13 | homeobox A13 |
| 15399 | Hoxa2 | homeobox A2 |
| 15400 | Hoxa3 | homeobox A3 |
| 15401 | Hoxa4 | homeobox A4 |
| 15402 | Hoxa5 | homeobox A5 |
| 15403 | Hoxa6 | homeobox A6 |
| 15404 | Hoxa7 | homeobox A7 |
| 15405 | Hoxa9 | homeobox A9 |
| 15408 | Hoxb13 | homeobox B13 |
| 15410 | Hoxb3 | homeobox B3 |
| 15412 | Hoxb4 | homeobox B4 |
| 15413 | Hoxb5 | homeobox B5 |
| 15414 | Hoxb6 | homeobox B6 |
| 15415 | Hoxb7 | homeobox B7 |
| 15416 | Hoxb8 | homeobox B8 |
| 15417 | Hoxb9 | homeobox B9 |
| 15421 | Hoxc12 | homeobox C12 |
| 15422 | Hoxc13 | homeobox C13 |
| 15423 | Hoxc4 | homeobox C4 |
| 15424 | Hoxc5 | homeobox C5 |
| 15425 | Hoxc6 | homeobox C6 |
| 15426 | Hoxc8 | homeobox C8 |
| 15430 | Hoxd10 | homeobox D10 |
| 15431 | Hoxd11 | homeobox D11 |
| 15432 | Hoxd12 | homeobox D12 |
| 15433 | Hoxd13 | homeobox D13 |
| 15434 | Hoxd3 | homeobox D3 |
| 15436 | Hoxd4 | homeobox D4 |
| 15437 | Hoxd8 | homeobox D8 |
| 15438 | Hoxd9 | homeobox D9 |
| 15499 | Hsf1 | heat shock factor 1 |
| 15500 | Hsf2 | heat shock factor 2 |
| 15900 | Irf8 | interferon regulatory factor 8 |
| 15901 | Id1 | inhibitor of DNA binding 1 |
| 15902 | Id2 | inhibitor of DNA binding 2 |
| 15903 | Id3 | inhibitor of DNA binding 3 |
| 15904 | Id4 | inhibitor of DNA binding 4 |
| 16362 | Irf1 | interferon regulatory factor 1 |
| 16363 | Irf2 | interferon regulatory factor 2 |
