Personal tools

Difference between revisions of "Template:Coexpression clusters"


Jump to: navigation, search
Line 182: Line 182:
"bInfo": false,
"bInfo": false,
"aaData": data,
"aaData": data,
"aoColumns": [{ "sTitle": "Motifs", "sWidth": "200pt"},{ "sTitle": "p-value" }],
"aoColumns": [{ "sTitle": "Motifs", "sWidth": "200pt"},{ "sTitle": "-log10(p-value)" }],
"aaSorting": [[ 1, "asc" ]],
"aaSorting": [[ 1, "desc" ]],

Revision as of 02:33, 29 November 2012

Full id: {{{full_id}}}

Phase1 CAGE Peaks

Pathway enrichment analysis

Analyst: Emmanuel Dimont

GOStat results on Coexpression cluster

The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner

GO IDGO nameFDR corrected p-value

Sample ontology enrichment analysis

The results for enrichment analysis on the data of MCL co-expression cluster. That are sorted by ontologies each samples belonging. <br>Analyst: Hideya Kawaji

Cell Type
Ontology termp-valuen
Uber Anatomy
Ontology termp-valuen
Ontology termp-valuen

TFBS overrepresentation

The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <br>Analyst: Michiel de Hoon

ENCODE TF ChIP-seq peak enrichment analysis

Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner

No analysis results for this cluster

Relative expression of the co-expression cluster


Expression error: Unrecognized punctuation character "{".