Template:Coexpression clusters: Difference between revisions
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=== Novel motifs === | === Novel motifs === | ||
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=== JASPAR motifs === | === JASPAR motifs === | ||
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== ENCODE TF ChIP-seq peak enrichment analysis == | == ENCODE TF ChIP-seq peak enrichment analysis == | ||
{{#info: Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki> 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner}} | {{#info: Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <nowiki><=</nowiki> 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner}} | ||
Revision as of 13:20, 12 February 2014
Full id: {{{full_id}}}
Phase1 CAGE Peaks
Pathway enrichment analysis
Analyst: Emmanuel Dimont<br>Integrating CAGE clusters and expression array data is combined at the functional level, resulting indefining common informative pathways and expression analysis results for pathway lists.<br><br>link to the source data.<br>data
GOStat results on Coexpression cluster
The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| {{{gostat_on_coexpression_clusters}}} |
Sample ontology enrichment analysis
The results for enrichment analysis on the data of MCL co-expression cluster. That are sorted by ontologies each samples belonging. <br>Analyst: Hideya Kawaji
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_celltype}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_uberon}}}|]] |
| Ontology term | p-value | n |
|---|---|---|
| [[{{{ontology_enrichment_disease}}}|]] |
TFBS overrepresentation
The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <br>Analyst: Michiel de Hoon
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis
Method: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br>Analyst: Erick Arner
No analysis results for this cluster
Relative expression of the co-expression cluster
<br>Analyst:
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