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Template:F5samples: Difference between revisions

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{{#if:{{#pos:{{{DRA_sample_Accession}}}|@|0}}|
{{#if:{{#pos:{{{DRA_sample_Accession}}}|@|0}}|
{{#set:sample_category={{{sample_category}}}}}
{{#set:sample_category={{{sample_category}}}}}
{{#arraymap:{{{data_phase}}}|,|$|{{#set:dataphase=$}} $}}
 


{{#arraydefine:accession_numbers_array|{{{accession_numbers}}}|!}}{{#loop: k
{{#arraydefine:accession_numbers_array|{{{accession_numbers}}}|!}}{{#loop: k
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}}
}}
{{#if:{{{timecourse}}}|{{#arraymap:{{{timecourse}}}|,|$| {{#set:timecourse=$}}}}|}}
{{#if:{{{timecourse}}}|{{#arraymap:{{{timecourse}}}|,|$| {{#set:timecourse=$}}}}|}}
{{#arraymap:{{{data_phase}}}|,|$|{{#set:dataphase=$}} this is $}}




[[Category:FF_Ontology]]
[[Category:FF_Ontology]]
[[Category:FF_Samples]]
[[Category:FF_Samples]]

Revision as of 11:01, 20 June 2014

Name:{{{name}}}
Species:{{{sample_species}}}
Sample type:{{{sample_category}}}
Genomic View:zenbu , UCSC
Library id:
Additional information
Sample information
strain: {{{sample_strain}}}
tissue:{{{sample_tissue}}}
dev_stage:{{{sample_dev_stage}}}
sex:{{{sample_sex}}}
age:{{{sample_age}}}
ethnicity:{{{sample_ethnicity}}}
cell_type:{{{sample_cell_type}}}
cell_line:{{{sample_cell_line}}}
collaboration:{{{sample_collaboration}}}
Experimental condition:{{{sample_experimental_condition}}}
disease:{{{sample_disease}}}
cell_lot;{{{sample_cell_lot}}}
cell_catalog:{{{sample_cell_catalog}}}
donor(cell lot):{{{sample_donor(cell lot)}}}
company:{{{sample_company}}}
Note:{{{sample_note}}}
Transcriptome profiling
hCAGE:{{{profile_hcage}}}
RNA-seq:{{{profile_rnaseq}}}
smallRNA seq:{{{profile_srnaseq}}}
nanoCAGEscan:{{{profile_cagescan}}}

RNA information
sample_id:{{{sample_id}}}
tube_id:{{{rna_tube_id}}}
box:{{{rna_box}}}
position:{{{rna_position}}}
tube_id:{{{rna_tube_id}}}
lot_number:{{{rna_lot_number}}}
catalog_number:{{{rna_catalog_number}}}
RIN:{{{rna_rin}}}
OD260/230:{{{rna_od260/230}}}
OD260/280:{{{rna_od260/280}}}
sample_type:{{{rna_sample_type}}}
weight_ug:{{{rna_weight_ug}}}
concentration:{{{rna_concentration}}}
extraction_protocol:(Details){{{rna_extraction_protocol}}}





FANTOM5 (FF) ontology


Direct parent terms

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
NA

DOID: Disease
NA

UBERON: Anatomy
NA

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA






















Property "Sample seq library id" (as page type) with input value "{{{profile_hcage}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Timecourse" (as page type) with input value "{{{timecourse}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Dataphase" (as page type) with input value "{{{data_phase}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. this is {{{data_phase}}}