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== Ancestors in FF ontology ==
== Ancestors in FF ontology (non-development) ==
{{#info: Connected ontology terms with is_a, part_of or located_in relathionship  <br>Analyst: Hideya Kawaji}}
{{#info: Connected ontology terms with is_a, part_of or located_in relathionship  <br>Analyst: Hideya Kawaji}}
<!--
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{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
</div>
</div>
}}
}}{{#if: {{{ancestors_in_disease_facet}}} |
{{#if: {{{ancestors_in_disease_facet}}} |
<div style="width:25%; float:left;">
<div style="width:25%; float:left;">
<b>DOID: Disease</b><br>
<b>DOID: Disease</b><br>
{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
</div>
</div>
}}
}}{{#if: {{{ancestors_in_anatomy_facet}}} |
{{#if: {{{ancestors_in_anatomy_facet}}} |
<div style="width:25%; float:left;">
<div style="width:25%; float:left;">
<b>UBERON: Anatomy</b><br>
<b>UBERON: Anatomy</b><br>
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
</div>
</div>
}}
}}{{#if: {{{ancestors_in_ff_facet}}} |
{{#if: {{{ancestors_in_ff_facet}}} |
<div style="width:25%; float:left;">
<div style="width:25%; float:left;">
<b>FF: FANTOM5</b><br>
<b>FF: FANTOM5</b><br>
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</div>
}}
}}
== Ancestors in FF ontology (development) ==
{{#info: Connected ontology terms with develops_from, derives_from or preceded_by relathionship  <br>Analyst: Hideya Kawaji}}
{{#arraymap:{{{ffid_belonging_in_development}}}|,|$|{{#ifexist:{{{ffid_belonging_in_development}}}|{{#set:ffid_belonging_in_development=$}}[[$|${{#show:$|?name}}]]}}|<br>}}


[[Category:FF_Ontology]]
[[Category:FF_Ontology]]
[[Category:FF_Samples]]
[[Category:FF_Samples]]

Revision as of 18:09, 9 July 2012

Name:{{{name}}}
Species:{{{sample_species}}}
Genomic View:zenbu , UCSC







Details

Transcriptome profiling

hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}

Sample info

strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition{{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}


RNA info

sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in FF ontology (non-development)

Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji

CL: Cell type

DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

UBERON: Anatomy

FF: FANTOM5

Ancestors in FF ontology (development)

Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji