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{{#switch:{{{datafreeze_phase}}}|1={{#set:datafreeze_phase=1}}|{{#set:datafreeze_phase=-1}}}}
{{#switch:{{{datafreeze_phase}}}|1={{#set:datafreeze_phase=1}}|{{#set:datafreeze_phase=-1}}}}
== Related MacroAPE_1083 Motifs ==
<html>
<script type="text/javascript">
$(document).ready(function() {
    $('.macroape_p_sample').dataTable({
"sScrollY": "300px",
"bPaginate": false,
"bScrollCollapse": true,
"iDisplayLength": -1,
"aaSorting": [[1,'asc']],
"aoColumnDefs": [{"bSortable": false, "aTargets": [ 0 ]}, { "sWidth": "200px", "sType": "numeric", "aTargets": [1] }]
});
});
</script>
</html>
{{#ask:[[Macroape_1083_sample_pvalue_ffid::{{PAGENAME}}]
|?Macroape_1083_sample_pvalue_pvalue|format=template|template=Doublecolumn_to_tbrow|intro=<html><table class="macroape_p_sample"><thead><tr><th>Motif name</th><th>P-value</th></tr></thead><tbody></html>|outro=<html></tbody></table></html>|limit=1100|searchlabel=}}


[[Category:FF_Ontology]]
[[Category:FF_Ontology]]
[[Category:FF_Samples]]
[[Category:FF_Samples]]

Revision as of 13:12, 30 August 2012


Name:{{{name}}}
Species:{{{sample_species}}}
Genomic View:zenbu , UCSC







Details

Transcriptome profiling

hCAGE {{{profile_hcage}}}
RNA-seq {{{profile_rnaseq}}}
smallRNA seq {{{profile_srnaseq}}}
nanoCAGEscan {{{profile_cagescan}}}

Sample info

strain {{{sample_strain}}}
tissue {{{sample_tissue}}}
dev_stage {{{sample_dev_stage}}}
sex {{{sample_sex}}}
age {{{sample_age}}}
ethnicity {{{sample_ethnicity}}}
cell_type {{{sample_cell_type}}}
cell_line {{{sample_cell_line}}}
collaboration {{{sample_collaboration}}}
Experimental condition{{{sample_experimental_condition}}}
disease {{{sample_disease}}}
cell_lot {{{sample_cell_lot}}}
cell_catalog {{{sample_cell_catalog}}}
company {{{sample_company}}}
donor(cell lot) {{{sample_donor(cell lot)}}}
Note {{{sample_note}}}


RNA info

sample_id {{{sample_id}}}
tube_id {{{rna_tube_id}}}
box {{{rna_box}}}
position {{{rna_position}}}
lot_number {{{rna_lot_number}}}
catalog_number {{{rna_catalog_number}}}
RIN {{{rna_rin}}}
OD260/230 {{{rna_od260/230}}}
OD260/280 {{{rna_od260/280}}}
sample_type {{{rna_sample_type}}}
extraction_protocol {{{rna_extraction_protocol}}}
weight_ug {{{rna_weight_ug}}}
concentration{{{rna_concentration}}}

Parent ontology

is_a relathionship
{{{is_a}}}

part_of relathionship
{{{part_of}}}

has_quality relathionship
{{{has_quality}}}

Ancestors in ontology (non-development)

Connected ontology terms with is_a, part_of or located_in relathionship <br>Analyst: Hideya Kawaji

CL: Cell type

DOID: Disease
Property "Ancestors in disease facet" (as page type) with input value "{{{ancestors_in_disease_facet}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

UBERON: Anatomy

FF: FANTOM5

Ancestors in ontology (development)

Connected ontology terms with develops_from, derives_from or preceded_by relathionship <br>Analyst: Hideya Kawaji



Related MacroAPE_1083 Motifs

{{#ask:[[Macroape_1083_sample_pvalue_ffid::F5samples] |?Macroape_1083_sample_pvalue_pvalue|format=template|template=Doublecolumn_to_tbrow|intro=

|outro=
Motif nameP-value

|limit=1100|searchlabel=}}