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== Ontology-based sample term enrichment analysis ==
== Ontology-based sample term enrichment analysis ==
{{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0  
{{#ifexpr: {{#expr: {{REVISIONTIMESTAMP}}-20120731160000 }} > 0  
| yes
|<html>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script>
<script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
 
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
.table_title{
text-align:left;
font-size:small;
text-decoration:underline;
color:dimgray;
}
</style>
<script type="text/javascript">
 
$(document).ready(function() {
    var oTable =  $('.enrichment_list').dataTable({
"sScrollY": "300px",
"bScrollCollapse": true,
"bPaginate": false,
"bFilter": false,
// "iDisplayLength": -1,
// "aLengthMenu": [[10, 25, 100, -1], [10, 25, 100, "All"]],
"aoColumnDefs": [ { "asSorting": [ "desc", "asc" ], "aTargets": [ "_all" ] }  , { "bSortable": false, "aTargets": [ 0 ] },  { "sType": "numeric", "aTargets": [1] }, { "sWidth": "50pt", "aTargets": [ 1 ] }],
"aaSorting": [[ 1, "desc" ]]
});
 
$("#test").text("<wiki>[[CL:0000322]]</wiki>");
});
</script>
</html>
 
<div style="float:left;width:33%;">
<table class="enrichment_list"><caption class="table_title">Cell Type</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
{{#arraymap:{{{ontology_enrichment_celltype}}}|!|$
|[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
|</td></tr><tr><td>}}
</td></tr>
<html></tbody></html></table>
</div>
 
<div style="float:left;width:33%;">
<table class="enrichment_list"><caption class="table_title">Uber Anatomy</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
{{#arraymap:{{{ontology_enrichment_uberon}}}|!|$
|[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
|</td></tr><tr><td>}}
</td></tr>
<html></tbody></html></table>
</div>
 
<div style="float:left;width:33%;">
<table class="enrichment_list"><caption class="table_title">Disease</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
{{#arraymap:{{{ontology_enrichment_disease}}}|!|$
|[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
|</td></tr><tr><td>}}
</td></tr>
<html></tbody></html></table>
</div>
 
<div style="clear:both;"></div>
| Now Updating
| Now Updating
}}  
}}  

Revision as of 14:39, 1 August 2012


short description:
EntrezGene: [[EntrezGene%3A{{{EntrezGene}}}|{{{EntrezGene}}}]]
description:
Species:
association
with transcript:
HGNC:
UniProt:

View on UCSC genome browser OSC local mirror

Mouse over to see Genome browser image, Click image to go to Genome browser

{{#ucsc_link:Template:FFCP|https://fantom5-collaboration.gsc.riken.jp/ucsc/}}

CAGE Expression

sample TPM value



  • Click each plot point to find sample in table

Ontology-based sample term enrichment analysis

Cell Type
Ontology termp-valuen
[[{{{ontology_enrichment_celltype}}}|]]
Uber Anatomy
Ontology termp-valuen
[[{{{ontology_enrichment_uberon}}}|]]
Disease
Ontology termp-valuen
[[{{{ontology_enrichment_disease}}}|]]
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